Hb_001827_020

Information

Type -
Description -
Location Contig1827: 50764-53806
Sequence    

Annotation

kegg
ID bvg:104896858
description uncharacterized LOC104896858
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q2QRE2
description Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g27870 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001827_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_011269_050 0.0007797724 - - -
3 Hb_077421_010 0.0026702277 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
4 Hb_002028_080 0.0028864006 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
5 Hb_000017_010 0.0032866725 - - -
6 Hb_003494_170 0.0036503659 - - -
7 Hb_001768_030 0.0039453762 - - -
8 Hb_000922_230 0.0057162125 - - -
9 Hb_004994_060 0.0062153804 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
10 Hb_004724_110 0.0090760691 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
11 Hb_000270_570 0.010071118 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
12 Hb_004642_010 0.0126153672 - - Integrase core domain, putative [Oryza sativa Japonica Group]
13 Hb_138358_010 0.0129773879 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
14 Hb_003147_030 0.0132106016 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
15 Hb_007945_040 0.0370462209 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_006642_010 0.08263947 - - -
17 Hb_027846_010 0.1362065786 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_111985_020 0.1381135916 - - -
19 Hb_002659_100 0.1396088341 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
20 Hb_000640_010 0.1437339529 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]

Gene co-expression network

sample Hb_001827_020 Hb_001827_020 Hb_011269_050 Hb_011269_050 Hb_001827_020--Hb_011269_050 Hb_077421_010 Hb_077421_010 Hb_001827_020--Hb_077421_010 Hb_002028_080 Hb_002028_080 Hb_001827_020--Hb_002028_080 Hb_000017_010 Hb_000017_010 Hb_001827_020--Hb_000017_010 Hb_003494_170 Hb_003494_170 Hb_001827_020--Hb_003494_170 Hb_001768_030 Hb_001768_030 Hb_001827_020--Hb_001768_030 Hb_011269_050--Hb_077421_010 Hb_011269_050--Hb_002028_080 Hb_011269_050--Hb_000017_010 Hb_011269_050--Hb_003494_170 Hb_011269_050--Hb_001768_030 Hb_077421_010--Hb_002028_080 Hb_077421_010--Hb_000017_010 Hb_077421_010--Hb_003494_170 Hb_004994_060 Hb_004994_060 Hb_077421_010--Hb_004994_060 Hb_002028_080--Hb_000017_010 Hb_002028_080--Hb_003494_170 Hb_002028_080--Hb_004994_060 Hb_000017_010--Hb_003494_170 Hb_000017_010--Hb_004994_060 Hb_003494_170--Hb_004994_060 Hb_000922_230 Hb_000922_230 Hb_001768_030--Hb_000922_230 Hb_004724_110 Hb_004724_110 Hb_001768_030--Hb_004724_110 Hb_000270_570 Hb_000270_570 Hb_001768_030--Hb_000270_570 Hb_001768_030--Hb_077421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00673841 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00510177 0

CAGE analysis