Hb_002028_080

Information

Type -
Description -
Location Contig2028: 113064-113851
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23440g
description POPTRDRAFT_866411; hypothetical protein
nr
ID KDP34000.1
description hypothetical protein JCGZ_07571 [Jatropha curcas]
swissprot
ID P93092
description Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1
trembl
ID A0A067KNY1
description Acyl carrier protein OS=Jatropha curcas GN=JCGZ_07571 PE=3 SV=1
Gene Ontology
ID GO:0016491
description acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_080 0.0 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
2 Hb_077421_010 0.0002161735 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
3 Hb_000017_010 0.0004002732 - - -
4 Hb_003494_170 0.0007639681 - - -
5 Hb_011269_050 0.0021066299 - - -
6 Hb_001827_020 0.0028864006 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_004994_060 0.0033290012 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
8 Hb_001768_030 0.0068317488 - - -
9 Hb_000922_230 0.008602562 - - -
10 Hb_004724_110 0.0119623566 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
11 Hb_000270_570 0.0129573825 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
12 Hb_004642_010 0.0155015636 - - Integrase core domain, putative [Oryza sativa Japonica Group]
13 Hb_138358_010 0.0158635736 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
14 Hb_003147_030 0.0160967802 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
15 Hb_007945_040 0.0341611157 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_006642_010 0.0855182118 - - -
17 Hb_027846_010 0.1333383838 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_111985_020 0.1409780801 - - -
19 Hb_184484_010 0.1423699516 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002659_100 0.1424728256 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_002028_080 Hb_002028_080 Hb_077421_010 Hb_077421_010 Hb_002028_080--Hb_077421_010 Hb_000017_010 Hb_000017_010 Hb_002028_080--Hb_000017_010 Hb_003494_170 Hb_003494_170 Hb_002028_080--Hb_003494_170 Hb_011269_050 Hb_011269_050 Hb_002028_080--Hb_011269_050 Hb_001827_020 Hb_001827_020 Hb_002028_080--Hb_001827_020 Hb_004994_060 Hb_004994_060 Hb_002028_080--Hb_004994_060 Hb_077421_010--Hb_000017_010 Hb_077421_010--Hb_003494_170 Hb_077421_010--Hb_011269_050 Hb_077421_010--Hb_001827_020 Hb_077421_010--Hb_004994_060 Hb_000017_010--Hb_003494_170 Hb_000017_010--Hb_011269_050 Hb_000017_010--Hb_004994_060 Hb_000017_010--Hb_001827_020 Hb_003494_170--Hb_004994_060 Hb_003494_170--Hb_011269_050 Hb_003494_170--Hb_001827_020 Hb_011269_050--Hb_001827_020 Hb_001768_030 Hb_001768_030 Hb_011269_050--Hb_001768_030 Hb_001827_020--Hb_001768_030 Hb_004994_060--Hb_011269_050 Hb_004994_060--Hb_001827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0665677 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0510958 0

CAGE analysis