Hb_003147_030

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig3147: 24523-27626
Sequence    

Annotation

kegg
ID rcu:RCOM_1326380
description transcription factor, putative
nr
ID XP_002520045.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q336N8
description Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica GN=JMJ706 PE=2 SV=1
trembl
ID B9S226
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1326380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003147_030 0.0 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
2 Hb_138358_010 0.0002332282 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
3 Hb_004642_010 0.0005952706 - - Integrase core domain, putative [Oryza sativa Japonica Group]
4 Hb_000270_570 0.0031396356 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
5 Hb_004724_110 0.0041347128 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
6 Hb_000922_230 0.0074945946 - - -
7 Hb_001768_030 0.0092654006 - - -
8 Hb_001827_020 0.0132106016 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_011269_050 0.0139903218 - - -
10 Hb_077421_010 0.0158806266 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
11 Hb_002028_080 0.0160967802 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
12 Hb_000017_010 0.016497015 - - -
13 Hb_003494_170 0.0168606735 - - -
14 Hb_004994_060 0.0194254059 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
15 Hb_007945_040 0.0502480518 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_006642_010 0.0694576305 - - -
17 Hb_111985_020 0.1249929994 - - -
18 Hb_002659_100 0.1264904136 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
19 Hb_000640_010 0.1306216737 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
20 Hb_011639_140 0.1324956511 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]

Gene co-expression network

sample Hb_003147_030 Hb_003147_030 Hb_138358_010 Hb_138358_010 Hb_003147_030--Hb_138358_010 Hb_004642_010 Hb_004642_010 Hb_003147_030--Hb_004642_010 Hb_000270_570 Hb_000270_570 Hb_003147_030--Hb_000270_570 Hb_004724_110 Hb_004724_110 Hb_003147_030--Hb_004724_110 Hb_000922_230 Hb_000922_230 Hb_003147_030--Hb_000922_230 Hb_001768_030 Hb_001768_030 Hb_003147_030--Hb_001768_030 Hb_138358_010--Hb_004642_010 Hb_138358_010--Hb_000270_570 Hb_138358_010--Hb_004724_110 Hb_138358_010--Hb_000922_230 Hb_138358_010--Hb_001768_030 Hb_004642_010--Hb_000270_570 Hb_004642_010--Hb_004724_110 Hb_004642_010--Hb_000922_230 Hb_004642_010--Hb_001768_030 Hb_000270_570--Hb_004724_110 Hb_000270_570--Hb_000922_230 Hb_000270_570--Hb_001768_030 Hb_004724_110--Hb_000922_230 Hb_004724_110--Hb_001768_030 Hb_000922_230--Hb_001768_030 Hb_001827_020 Hb_001827_020 Hb_000922_230--Hb_001827_020 Hb_011269_050 Hb_011269_050 Hb_000922_230--Hb_011269_050 Hb_001768_030--Hb_001827_020 Hb_001768_030--Hb_011269_050 Hb_077421_010 Hb_077421_010 Hb_001768_030--Hb_077421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.010458 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00743473 0

CAGE analysis