Hb_011639_140

Information

Type transcription factor
Description TF Family: M-type
Location Contig11639: 135227-136265
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G200400g
description hypothetical protein
nr
ID KDP35959.1
description hypothetical protein JCGZ_09931 [Jatropha curcas]
swissprot
ID Q6VAM4
description MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1
trembl
ID A0A067KVR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09931 PE=4 SV=1
Gene Ontology
ID GO:0003677
description agamous-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011639_140 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
2 Hb_011010_010 0.0003447791 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000640_010 0.0018888536 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
4 Hb_002659_100 0.0060511795 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
5 Hb_111985_020 0.0075592716 - - -
6 Hb_001013_020 0.0158256785 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006642_010 0.0632867663 - - -
8 Hb_020111_010 0.0656895795 - - PREDICTED: uncharacterized protein LOC102661177 [Glycine max]
9 Hb_004147_050 0.0698195025 - - hypothetical protein JCGZ_03640 [Jatropha curcas]
10 Hb_003506_060 0.1323552028 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
11 Hb_003147_030 0.1324956511 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
12 Hb_138358_010 0.1327272339 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
13 Hb_004642_010 0.1330867119 - - Integrase core domain, putative [Oryza sativa Japonica Group]
14 Hb_000270_570 0.1356127083 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
15 Hb_004724_110 0.1366004371 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
16 Hb_000922_230 0.139934827 - - -
17 Hb_001768_030 0.1416917771 - - -
18 Hb_001827_020 0.1456050716 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_011269_050 0.1463783172 - - -
20 Hb_077421_010 0.1482526956 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]

Gene co-expression network

sample Hb_011639_140 Hb_011639_140 Hb_011010_010 Hb_011010_010 Hb_011639_140--Hb_011010_010 Hb_000640_010 Hb_000640_010 Hb_011639_140--Hb_000640_010 Hb_002659_100 Hb_002659_100 Hb_011639_140--Hb_002659_100 Hb_111985_020 Hb_111985_020 Hb_011639_140--Hb_111985_020 Hb_001013_020 Hb_001013_020 Hb_011639_140--Hb_001013_020 Hb_006642_010 Hb_006642_010 Hb_011639_140--Hb_006642_010 Hb_011010_010--Hb_000640_010 Hb_011010_010--Hb_002659_100 Hb_011010_010--Hb_111985_020 Hb_011010_010--Hb_001013_020 Hb_011010_010--Hb_006642_010 Hb_000640_010--Hb_002659_100 Hb_000640_010--Hb_111985_020 Hb_000640_010--Hb_001013_020 Hb_000640_010--Hb_006642_010 Hb_002659_100--Hb_111985_020 Hb_002659_100--Hb_001013_020 Hb_002659_100--Hb_006642_010 Hb_111985_020--Hb_001013_020 Hb_111985_020--Hb_006642_010 Hb_020111_010 Hb_020111_010 Hb_001013_020--Hb_020111_010 Hb_003147_030 Hb_003147_030 Hb_006642_010--Hb_003147_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.92394 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.338225 0

CAGE analysis