Hb_003506_060

Information

Type -
Description -
Location Contig3506: 75779-76488
Sequence    

Annotation

kegg
ID rcu:RCOM_0324140
description glutathione-s-transferase theta, gst, putative (EC:2.5.1.18)
nr
ID XP_012092523.1
description PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JM15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04912 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003506_060 0.0 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
2 Hb_004147_050 0.0629618454 - - hypothetical protein JCGZ_03640 [Jatropha curcas]
3 Hb_020111_010 0.0670897986 - - PREDICTED: uncharacterized protein LOC102661177 [Glycine max]
4 Hb_001013_020 0.1166929485 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011010_010 0.1320143515 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_011639_140 0.1323552028 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
7 Hb_000640_010 0.1342222566 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
8 Hb_002659_100 0.1383348823 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
9 Hb_111985_020 0.1398244103 - - -
10 Hb_006642_010 0.1946786212 - - -
11 Hb_003147_030 0.2623875453 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
12 Hb_138358_010 0.262613473 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
13 Hb_004642_010 0.2629641653 - - Integrase core domain, putative [Oryza sativa Japonica Group]
14 Hb_000270_570 0.2654281657 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
15 Hb_004724_110 0.2663915293 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
16 Hb_000922_230 0.2696431595 - - -
17 Hb_001768_030 0.2713561898 - - -
18 Hb_000005_120 0.2745893789 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
19 Hb_000011_130 0.2745893789 - - lipase [Ricinus communis]
20 Hb_000046_140 0.2745893789 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003506_060 Hb_003506_060 Hb_004147_050 Hb_004147_050 Hb_003506_060--Hb_004147_050 Hb_020111_010 Hb_020111_010 Hb_003506_060--Hb_020111_010 Hb_001013_020 Hb_001013_020 Hb_003506_060--Hb_001013_020 Hb_011010_010 Hb_011010_010 Hb_003506_060--Hb_011010_010 Hb_011639_140 Hb_011639_140 Hb_003506_060--Hb_011639_140 Hb_000640_010 Hb_000640_010 Hb_003506_060--Hb_000640_010 Hb_004147_050--Hb_020111_010 Hb_004147_050--Hb_001013_020 Hb_004147_050--Hb_011010_010 Hb_004147_050--Hb_011639_140 Hb_004147_050--Hb_000640_010 Hb_020111_010--Hb_001013_020 Hb_020111_010--Hb_011010_010 Hb_020111_010--Hb_011639_140 Hb_020111_010--Hb_000640_010 Hb_001013_020--Hb_011010_010 Hb_001013_020--Hb_011639_140 Hb_001013_020--Hb_000640_010 Hb_002659_100 Hb_002659_100 Hb_001013_020--Hb_002659_100 Hb_111985_020 Hb_111985_020 Hb_001013_020--Hb_111985_020 Hb_011010_010--Hb_011639_140 Hb_011010_010--Hb_000640_010 Hb_011010_010--Hb_002659_100 Hb_011010_010--Hb_111985_020 Hb_006642_010 Hb_006642_010 Hb_011010_010--Hb_006642_010 Hb_011639_140--Hb_000640_010 Hb_011639_140--Hb_002659_100 Hb_011639_140--Hb_111985_020 Hb_011639_140--Hb_006642_010 Hb_000640_010--Hb_002659_100 Hb_000640_010--Hb_111985_020 Hb_000640_010--Hb_006642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.455342 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0758941 0

CAGE analysis