Hb_001798_050

Information

Type transcription factor
Description TF Family: NAC
Location Contig1798: 41626-45137
Sequence    

Annotation

kegg
ID cic:CICLE_v10010524mg
description hypothetical protein
nr
ID AGL39713.1
description NAC transcription factor 057 [Jatropha curcas]
swissprot
ID A0SPJ6
description NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum GN=NAM-B2 PE=2 SV=1
trembl
ID R4N7R6
description NAC transcription factor 057 OS=Jatropha curcas GN=JCGZ_08700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 67-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001798_050 0.0 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
2 Hb_068804_160 0.170305887 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
3 Hb_136696_010 0.1827768767 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_002779_020 0.1835979436 - - transcription factor, putative [Ricinus communis]
5 Hb_115350_010 0.1840398935 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
6 Hb_061390_010 0.1855508043 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_008880_010 0.1856777463 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
8 Hb_000007_050 0.2589511596 - - -
9 Hb_000075_050 0.2589511596 - - -
10 Hb_000076_010 0.2589511596 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
11 Hb_000103_500 0.2589511596 - - RNA binding protein, putative [Ricinus communis]
12 Hb_000130_290 0.2589511596 - - glycosyltransferase, putative [Ricinus communis]
13 Hb_000159_010 0.2589511596 - - -
14 Hb_000184_060 0.2589511596 - - -
15 Hb_000193_020 0.2589511596 - - -
16 Hb_000340_470 0.2589511596 - - -
17 Hb_000380_080 0.2589511596 - - hypothetical protein JCGZ_05489 [Jatropha curcas]
18 Hb_000431_110 0.2589511596 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
19 Hb_000465_370 0.2589511596 - - hypothetical protein CISIN_1g039324mg, partial [Citrus sinensis]
20 Hb_000732_040 0.2589511596 transcription factor TF Family: MYB Transcription repressor MYB4, putative [Ricinus communis]

Gene co-expression network

sample Hb_001798_050 Hb_001798_050 Hb_068804_160 Hb_068804_160 Hb_001798_050--Hb_068804_160 Hb_136696_010 Hb_136696_010 Hb_001798_050--Hb_136696_010 Hb_002779_020 Hb_002779_020 Hb_001798_050--Hb_002779_020 Hb_115350_010 Hb_115350_010 Hb_001798_050--Hb_115350_010 Hb_061390_010 Hb_061390_010 Hb_001798_050--Hb_061390_010 Hb_008880_010 Hb_008880_010 Hb_001798_050--Hb_008880_010 Hb_068804_160--Hb_136696_010 Hb_068804_160--Hb_002779_020 Hb_068804_160--Hb_115350_010 Hb_068804_160--Hb_061390_010 Hb_068804_160--Hb_008880_010 Hb_004304_050 Hb_004304_050 Hb_068804_160--Hb_004304_050 Hb_136696_010--Hb_002779_020 Hb_136696_010--Hb_115350_010 Hb_136696_010--Hb_061390_010 Hb_136696_010--Hb_008880_010 Hb_136696_010--Hb_004304_050 Hb_002779_020--Hb_115350_010 Hb_002779_020--Hb_061390_010 Hb_002779_020--Hb_008880_010 Hb_002779_020--Hb_004304_050 Hb_115350_010--Hb_061390_010 Hb_115350_010--Hb_008880_010 Hb_115350_010--Hb_004304_050 Hb_061390_010--Hb_008880_010 Hb_061390_010--Hb_004304_050 Hb_008880_010--Hb_004304_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0146392 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0998975 0 0 0 0

CAGE analysis