Hb_001385_020

Information

Type -
Description -
Location Contig1385: 19420-20362
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39010g
description POPTRDRAFT_753418; hypothetical protein
nr
ID XP_002298925.2
description hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GGZ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39010g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001385_020 0.0 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
2 Hb_000288_050 0.0004806108 - - conserved hypothetical protein [Ricinus communis]
3 Hb_133913_010 0.0007849822 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_000199_050 0.0150117088 - - Gibberellin 20 oxidase, putative [Ricinus communis]
5 Hb_001348_240 0.0151429106 - - Putative polyprotein, identical [Solanum demissum]
6 Hb_001623_450 0.0152368769 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
7 Hb_002396_010 0.0153018564 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
8 Hb_174010_030 0.0156341633 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_004145_030 0.015827582 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_006599_040 0.0158905201 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000777_010 0.0163776498 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
12 Hb_000905_010 0.0166434184 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
13 Hb_001782_090 0.0171090144 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
14 Hb_004984_090 0.0179731911 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_026317_020 0.0186832215 - - hypothetical protein VITISV_035911 [Vitis vinifera]
16 Hb_001307_230 0.0199228996 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
17 Hb_001172_110 0.0217624244 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
18 Hb_002375_100 0.0226461514 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
19 Hb_000789_210 0.0228524746 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
20 Hb_000668_030 0.0246019231 - - -

Gene co-expression network

sample Hb_001385_020 Hb_001385_020 Hb_000288_050 Hb_000288_050 Hb_001385_020--Hb_000288_050 Hb_133913_010 Hb_133913_010 Hb_001385_020--Hb_133913_010 Hb_000199_050 Hb_000199_050 Hb_001385_020--Hb_000199_050 Hb_001348_240 Hb_001348_240 Hb_001385_020--Hb_001348_240 Hb_001623_450 Hb_001623_450 Hb_001385_020--Hb_001623_450 Hb_002396_010 Hb_002396_010 Hb_001385_020--Hb_002396_010 Hb_000288_050--Hb_133913_010 Hb_000288_050--Hb_001348_240 Hb_000288_050--Hb_002396_010 Hb_174010_030 Hb_174010_030 Hb_000288_050--Hb_174010_030 Hb_004145_030 Hb_004145_030 Hb_000288_050--Hb_004145_030 Hb_133913_010--Hb_001348_240 Hb_133913_010--Hb_002396_010 Hb_133913_010--Hb_174010_030 Hb_133913_010--Hb_004145_030 Hb_000199_050--Hb_001623_450 Hb_004984_090 Hb_004984_090 Hb_000199_050--Hb_004984_090 Hb_000789_210 Hb_000789_210 Hb_000199_050--Hb_000789_210 Hb_000668_030 Hb_000668_030 Hb_000199_050--Hb_000668_030 Hb_001115_060 Hb_001115_060 Hb_000199_050--Hb_001115_060 Hb_002281_060 Hb_002281_060 Hb_000199_050--Hb_002281_060 Hb_001348_240--Hb_002396_010 Hb_001348_240--Hb_174010_030 Hb_001348_240--Hb_004145_030 Hb_006599_040 Hb_006599_040 Hb_001348_240--Hb_006599_040 Hb_000777_010 Hb_000777_010 Hb_001348_240--Hb_000777_010 Hb_000905_010 Hb_000905_010 Hb_001348_240--Hb_000905_010 Hb_001623_450--Hb_004984_090 Hb_001623_450--Hb_000789_210 Hb_001623_450--Hb_000668_030 Hb_001623_450--Hb_001115_060 Hb_001623_450--Hb_002281_060 Hb_002396_010--Hb_174010_030 Hb_002396_010--Hb_004145_030 Hb_002396_010--Hb_006599_040 Hb_002396_010--Hb_000777_010 Hb_002396_010--Hb_000905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0449436 0.554695

CAGE analysis