Hb_000976_370

Information

Type -
Description -
Location Contig976: 298726-301979
Sequence    

Annotation

kegg
ID rcu:RCOM_1576660
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002513440.1
description beta-glucosidase, putative [Ricinus communis]
swissprot
ID Q5Z9Z0
description Beta-glucosidase 24 OS=Oryza sativa subsp. japonica GN=BGLU24 PE=2 SV=1
trembl
ID B9RI71
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1576660 PE=3 SV=1
Gene Ontology
ID GO:0016798
description glycoside hydrolase family 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_370 0.0 - - beta-glucosidase, putative [Ricinus communis]
2 Hb_120112_010 0.004157418 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_008689_020 0.007544145 - - conserved hypothetical protein [Ricinus communis]
4 Hb_106496_010 0.1911371455 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
5 Hb_008221_120 0.2440304223 - - PREDICTED: GDSL esterase/lipase At5g63170-like [Jatropha curcas]
6 Hb_005305_190 0.2493465326 transcription factor TF Family: NAC -
7 Hb_001934_020 0.2953220214 - - PREDICTED: uncharacterized protein LOC105178413 [Sesamum indicum]
8 Hb_000445_240 0.3158694072 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015836_010 0.3259286036 - - -
10 Hb_017214_050 0.3319105584 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_005952_020 0.3334995528 - - -
12 Hb_002027_370 0.3335605567 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005779_070 0.3347241817 - - -
14 Hb_010589_100 0.3364249784 - - Thioredoxin domain-containing protein 9-like protein [Morus notabilis]
15 Hb_003687_180 0.3546277409 - - hypothetical protein JCGZ_02335 [Jatropha curcas]
16 Hb_074683_010 0.3562778794 - - -
17 Hb_151978_010 0.3629898014 - - -
18 Hb_032533_010 0.3630093589 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
19 Hb_029142_080 0.3646207248 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_114146_010 0.3790895598 - - hypothetical protein JCGZ_15608 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_370 Hb_000976_370 Hb_120112_010 Hb_120112_010 Hb_000976_370--Hb_120112_010 Hb_008689_020 Hb_008689_020 Hb_000976_370--Hb_008689_020 Hb_106496_010 Hb_106496_010 Hb_000976_370--Hb_106496_010 Hb_008221_120 Hb_008221_120 Hb_000976_370--Hb_008221_120 Hb_005305_190 Hb_005305_190 Hb_000976_370--Hb_005305_190 Hb_001934_020 Hb_001934_020 Hb_000976_370--Hb_001934_020 Hb_120112_010--Hb_008689_020 Hb_120112_010--Hb_106496_010 Hb_120112_010--Hb_008221_120 Hb_120112_010--Hb_005305_190 Hb_120112_010--Hb_001934_020 Hb_008689_020--Hb_106496_010 Hb_008689_020--Hb_008221_120 Hb_008689_020--Hb_005305_190 Hb_008689_020--Hb_001934_020 Hb_106496_010--Hb_001934_020 Hb_106496_010--Hb_008221_120 Hb_106496_010--Hb_005305_190 Hb_008221_120--Hb_005305_190 Hb_005952_020 Hb_005952_020 Hb_008221_120--Hb_005952_020 Hb_005779_070 Hb_005779_070 Hb_008221_120--Hb_005779_070 Hb_010589_100 Hb_010589_100 Hb_008221_120--Hb_010589_100 Hb_005305_190--Hb_005779_070 Hb_005305_190--Hb_005952_020 Hb_005305_190--Hb_010589_100 Hb_000445_240 Hb_000445_240 Hb_005305_190--Hb_000445_240 Hb_007140_010 Hb_007140_010 Hb_005305_190--Hb_007140_010 Hb_001934_020--Hb_008221_120 Hb_001934_020--Hb_010589_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0175553 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0315363 0 0 0

CAGE analysis