Gene annotation
Transcriptome id Sobic.010G108900.2,Sobic.010G108900.1
Synonym Sb10g009520, RAD23D
Functional annotation RAD23 DNA repair protein, putative, expressed
UniProt A0A194YIG2 , A0A194YID9
Pfam PF00240 PF00627 PF09280 PF00240 PF09280 PF00627
Panther DB PTHR10621 PTHR10621:SF8
NCBI CDD KOG0011; Nucleotide excision repair factor NEF2, RAD23 component
KEGG Orthology K10839; RAD23, UV excision repair protein RAD23
Gene Ontology GO:0005515; protein binding GO:0006289nucleotide-excision repair GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT3G02540 : Rad23 UV excision repair protein family
RAP-DB (Rice) LOC_Os06g15360.1 : RAD23 DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a050394 , Zm00025a042700
Brachypodium KQK18672 , KQK18671 , PNT76097
Barley HORVU7Hr1G042100.6 , HORVU7Hr1G042100.7 , HORVU7Hr1G042100.4 , HORVU7Hr1G042100.2 , HORVU7Hr1G042100.3 , HORVU7Hr1G042100.1 , HORVU7Hr1G042100.8 , HORVU7Hr1G042100.9 , HORVU7Hr1G042100.5
Wheat TraesCS7A02G206300 , TraesCS7D02G209100
Populus -


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cDNA sequences
Sobic.010G108900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G380500 appr-1-p processing enzyme family protein, putative, expressed -
2 Sobic.001G218800 expressed protein -
3 Sobic.006G168400 ethylene-responsive element-binding protein, putative, expressed -
4 Sobic.003G004700 SOUL heme-binding protein, putative, expressed -
5 Sobic.006G183000 RING zinc finger protein, putative, expressed -
6 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
7 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
8 Sobic.009G108500 acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
9 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
10 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
12 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
13 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
14 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
15 Sobic.004G260400 expressed protein K07018: uncharacterized protein
16 Sobic.002G268400 expressed protein -
17 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
18 Sobic.002G242200 expressed protein -
19 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
20 Sobic.003G190500 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase


Gene co-expression network
sample Sobic010G108900 Sobic010G108900 Sobic001G380500 Sobic001G380500 Sobic010G108900--Sobic001G380500 Sobic001G218800 Sobic001G218800 Sobic010G108900--Sobic001G218800 Sobic006G168400 Sobic006G168400 Sobic010G108900--Sobic006G168400 Sobic003G004700 Sobic003G004700 Sobic010G108900--Sobic003G004700 Sobic006G183000 Sobic006G183000 Sobic010G108900--Sobic006G183000 Sobic001G469200 Sobic001G469200 Sobic010G108900--Sobic001G469200 Sobic002G262000 Sobic002G262000 Sobic010G108900--Sobic002G262000 Sobic009G108500 Sobic009G108500 Sobic010G108900--Sobic009G108500 Sobic006G109700 Sobic006G109700 Sobic010G108900--Sobic006G109700 Sobic009G029700 Sobic009G029700 Sobic001G380500--Sobic009G029700 Sobic001G380500--Sobic010G108900 Sobic007G168200 Sobic007G168200 Sobic001G380500--Sobic007G168200 Sobic007G029100 Sobic007G029100 Sobic001G380500--Sobic007G029100 Sobic001G380500--Sobic001G218800 Sobic002G039000 Sobic002G039000 Sobic001G380500--Sobic002G039000 Sobic001G380500--Sobic006G168400 Sobic001G418800 Sobic001G418800 Sobic001G380500--Sobic001G418800 Sobic002G404200 Sobic002G404200 Sobic001G380500--Sobic002G404200 Sobic001G218800--Sobic010G108900 Sobic001G218800--Sobic003G004700 Sobic010G176500 Sobic010G176500 Sobic001G218800--Sobic010G176500 Sobic003G123000 Sobic003G123000 Sobic001G218800--Sobic003G123000 Sobic010G000300 Sobic010G000300 Sobic001G218800--Sobic010G000300 Sobic001G218800--Sobic001G380500 Sobic006G087100 Sobic006G087100 Sobic001G218800--Sobic006G087100 Sobic006G233300 Sobic006G233300 Sobic001G218800--Sobic006G233300 Sobic001G218800--Sobic009G108500 Sobic006G168400--Sobic010G108900 Sobic006G168400--Sobic001G380500 Sobic006G168400--Sobic002G262000 Sobic002G333100 Sobic002G333100 Sobic006G168400--Sobic002G333100 Sobic006G168400--Sobic003G004700 Sobic006G168400--Sobic006G183000 Sobic001G463500 Sobic001G463500 Sobic006G168400--Sobic001G463500 Sobic006G168400--Sobic006G109700 Sobic006G168400--Sobic001G218800 Sobic003G004700--Sobic001G218800 Sobic003G004700--Sobic010G108900 Sobic003G004700--Sobic010G176500 Sobic003G004700--Sobic001G380500 Sobic003G004700--Sobic009G108500 Sobic003G004700--Sobic006G109700 Sobic003G004700--Sobic002G039000 Sobic001G263000 Sobic001G263000 Sobic003G004700--Sobic001G263000 Sobic003G004700--Sobic006G087100 Sobic002G129000 Sobic002G129000 Sobic006G183000--Sobic002G129000 Sobic001G294900 Sobic001G294900 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic002G199400 Sobic002G199400 Sobic001G469200--Sobic002G199400 Sobic001G115500 Sobic001G115500 Sobic001G469200--Sobic001G115500 Sobic001G085800 Sobic001G085800 Sobic001G469200--Sobic001G085800 Sobic005G115500 Sobic005G115500 Sobic001G469200--Sobic005G115500 Sobic003G132000 Sobic003G132000 Sobic001G469200--Sobic003G132000 Sobic004G075200 Sobic004G075200 Sobic001G469200--Sobic004G075200 Sobic001G469200--Sobic010G108900 Sobic006G245700 Sobic006G245700 Sobic001G469200--Sobic006G245700 Sobic001G487100 Sobic001G487100 Sobic001G469200--Sobic001G487100 Sobic004G356900 Sobic004G356900 Sobic002G262000--Sobic004G356900 Sobic002G071000 Sobic002G071000 Sobic002G262000--Sobic002G071000 Sobic003G117300 Sobic003G117300 Sobic002G262000--Sobic003G117300 Sobic002G262000--Sobic010G108900 Sobic006G049700 Sobic006G049700 Sobic002G262000--Sobic006G049700 Sobic001G234200 Sobic001G234200 Sobic002G262000--Sobic001G234200 Sobic002G262000--Sobic006G183000 Sobic004G232800 Sobic004G232800 Sobic002G262000--Sobic004G232800 Sobic004G348900 Sobic004G348900 Sobic002G262000--Sobic004G348900 Sobic009G108500--Sobic006G183000 Sobic009G108500--Sobic006G087100 Sobic001G532100 Sobic001G532100 Sobic009G108500--Sobic001G532100 Sobic001G189600 Sobic001G189600 Sobic009G108500--Sobic001G189600 Sobic009G108500--Sobic001G294900 Sobic009G108500--Sobic006G109700 Sobic009G108500--Sobic010G108900 Sobic006G225300 Sobic006G225300 Sobic009G108500--Sobic006G225300 Sobic006G203100 Sobic006G203100 Sobic009G108500--Sobic006G203100 Sobic008G137600 Sobic008G137600 Sobic006G109700--Sobic008G137600 Sobic001G444300 Sobic001G444300 Sobic006G109700--Sobic001G444300 Sobic006G109700--Sobic006G183000 Sobic006G109700--Sobic001G294900 Sobic009G168000 Sobic009G168000 Sobic006G109700--Sobic009G168000 Sobic006G211800 Sobic006G211800 Sobic006G109700--Sobic006G211800 Sobic006G231500 Sobic006G231500 Sobic006G109700--Sobic006G231500 Sobic006G109700--Sobic004G348900 Sobic001G502200 Sobic001G502200 Sobic006G109700--Sobic001G502200
Octagon: transcription factors


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