Gene annotation
Transcriptome id Sobic.010G076600.1
Synonym SORBI_3010G076600, SORBIDRAFT_10g006630, Sb10g006630
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Serine/threonine-protein kinase RIPK (PubMedID : 31721651)
tyrosine protein kinase domain containing protein, putative, expressed
UniProt C5Z6B5
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF179
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G05940 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os06g10160.1 : tyrosine protein kinase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017867 , Zm00025a004854 , Zm00025a049633 , Zm00025a052320 , Zm00025a023843 , Zm00025a011296 , Zm00025a029688 , Zm00025a012726 , Zm00025a030297 , Zm00025a047168 , Zm00025a040184 , Zm00025a042449 , Zm00025a048740 , Zm00025a000914 , Zm00025a037383 , Zm00025a025430 , Zm00025a044003 , Zm00025a039496 , Zm00025a056619 , Zm00025a053364 , Zm00025a029517 , Zm00025a030142 , Zm00025a032161 , Zm00025a053530 , Zm00025a002811
Brachypodium KQK19638 , KQK19114 , KQK21579 , KQK00546 , KQK01632 , PNT72055 , KQK19122 , KQK19123 , KQK15277 , KQK21320 , KQK05701 , KQK01265 , KQK23815 , PNT73321 , KQJ91661 , KQK11777 , PNT69406 , KQJ88913
Barley HORVU1Hr1G083220.10 , HORVU1Hr1G083220.11 , HORVU1Hr1G083220.12 , HORVU3Hr1G017020.30 , HORVU1Hr1G004690.7 , HORVU1Hr1G004690.4 , HORVU1Hr1G004690.3 , HORVU1Hr1G004690.1 , HORVU1Hr1G004690.10 , HORVU1Hr1G004690.11 , HORVU4Hr1G066310.2 , HORVU1Hr1G004590.8 , HORVU4Hr1G066310.10 , HORVU4Hr1G066310.11 , HORVU1Hr1G083220.3 , HORVU1Hr1G083220.6 , HORVU1Hr1G083220.4 , HORVU1Hr1G083220.9 , HORVU7Hr1G108150.3 , HORVU7Hr1G108150.6 , HORVU4Hr1G066310.8 , HORVU4Hr1G066310.9 , HORVU1Hr1G004590.9 , HORVU1Hr1G004590.1 , HORVU1Hr1G004590.3 , HORVU1Hr1G004590.2 , HORVU1Hr1G004590.5 , HORVU1Hr1G004590.4 , HORVU1Hr1G004590.7 , HORVU1Hr1G004590.6 , HORVU1Hr1G004590.10 , HORVU4Hr1G000590.4 , HORVU4Hr1G000590.5 , HORVU4Hr1G000590.6 , HORVU4Hr1G000590.1 , HORVU4Hr1G000590.2 , HORVU4Hr1G000590.3 , HORVU4Hr1G082100.1 , HORVU4Hr1G082100.2 , HORVU4Hr1G082100.5 , HORVU4Hr1G082100.4 , HORVU3Hr1G017020.19 , HORVU3Hr1G017020.18 , HORVU3Hr1G017020.17 , HORVU3Hr1G017020.14 , HORVU3Hr1G017020.13 , HORVU3Hr1G017020.12 , HORVU3Hr1G017020.11 , HORVU3Hr1G017020.10 , HORVU3Hr1G017020.33 , HORVU3Hr1G017020.32 , HORVU3Hr1G064110.9 , HORVU3Hr1G064110.8 , HORVU3Hr1G064110.5 , HORVU3Hr1G064110.7 , HORVU3Hr1G064110.6 , HORVU3Hr1G064110.1 , HORVU3Hr1G064110.3 , HORVU3Hr1G064110.2 , HORVU3Hr1G017020.31 , HORVU7Hr1G034290.3 , HORVU7Hr1G034290.2 , HORVU7Hr1G034290.1 , HORVU7Hr1G034290.7 , HORVU7Hr1G034290.6 , HORVU7Hr1G034290.5 , HORVU7Hr1G034290.4 , HORVU7Hr1G034290.9 , HORVU7Hr1G034290.8 , HORVU4Hr1G025070.2 , HORVU4Hr1G025070.3 , HORVU4Hr1G025070.1 , HORVU3Hr1G064110.11 , HORVU3Hr1G064110.10 , HORVU3Hr1G064110.13 , HORVU3Hr1G064110.12 , HORVU3Hr1G064110.15 , HORVU3Hr1G064110.14 , HORVU3Hr1G018030.1 , HORVU3Hr1G018030.3 , HORVU3Hr1G018030.2 , HORVU5Hr1G107330.2 , HORVU5Hr1G107330.1 , HORVU7Hr1G088710.3 , HORVU7Hr1G088710.2 , HORVU7Hr1G108150.1 , HORVU7Hr1G108150.4 , HORVU7Hr1G108150.5 , HORVU7Hr1G108150.7 , HORVU4Hr1G016080.1 , HORVU6Hr1G081330.3 , HORVU6Hr1G081330.2 , HORVU6Hr1G081330.4 , HORVU3Hr1G017020.26 , HORVU3Hr1G017020.27 , HORVU3Hr1G017020.25 , HORVU3Hr1G017020.20 , HORVU3Hr1G017020.28 , HORVU3Hr1G017020.29 , HORVU7Hr1G108150.2 , HORVU3Hr1G017020.7 , HORVU3Hr1G017020.6 , HORVU3Hr1G017020.5 , HORVU3Hr1G017020.4 , HORVU3Hr1G017020.3 , HORVU3Hr1G017020.2 , HORVU3Hr1G017020.9
Wheat TraesCS6A02G336600 , TraesCS4D02G000300 , TraesCS1A02G031200 , TraesCS1D02G032600 , TraesCS6D02G316600 , TraesCS2A02G508700 , TraesCS3A02G530200 , TraesCS7D02G461900 , TraesCS3D02G095200 , TraesCS4A02G000300 , TraesCS7B02G069100 , TraesCS1B02G038800 , TraesCS4D02G238900 , TraesCS7D02G318600 , TraesCS7D02G318600 , TraesCS4B02G238700 , TraesCS4D02G322300 , TraesCS4D02G322300 , TraesCS6B02G367100 , TraesCSU02G047400 , TraesCS3A02G262100 , TraesCS3A02G262100 , TraesCS3A02G262100 , TraesCS3D02G535700 , TraesCS3A02G262100 , TraesCS7D02G165300 , TraesCS7B02G376400 , TraesCS6D02G027700 , TraesCS4B02G294300 , TraesCS4A02G010000 , TraesCS1B02G479300 , TraesCS3B02G295400 , TraesCS4B02G000300 , TraesCS7B02G448200 , TraesCS4D02G293200 , TraesCS4A02G062000 , TraesCS7A02G163300 , TraesCS5A02G084200 , TraesCS5B02G069900 , TraesCS5B02G089800 , TraesCS4B02G325400 , TraesCSU02G047400 , TraesCS3D02G048000 , TraesCS3B02G295400 , TraesCS3B02G295400 , TraesCS3B02G295400 , TraesCS3D02G262200 , TraesCS3D02G262200 , TraesCS5D02G096200 , TraesCS6B02G033300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.001G476400 - -
4 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
5 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
6 Sobic.003G338900 expressed protein -
7 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
8 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
9 Sobic.003G296700 protein kinase domain containing protein, expressed -
10 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
11 Sobic.010G080400 AP2 domain containing protein, expressed -
12 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
13 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
14 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
16 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.003G150400 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed -
20 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic010G076600 Sobic010G076600 Sobic006G184400 Sobic006G184400 Sobic010G076600--Sobic006G184400 Sobic001G209800 Sobic001G209800 Sobic010G076600--Sobic001G209800 Sobic001G476400 Sobic001G476400 Sobic010G076600--Sobic001G476400 Sobic001G473900 Sobic001G473900 Sobic010G076600--Sobic001G473900 Sobic009G217600 Sobic009G217600 Sobic010G076600--Sobic009G217600 Sobic003G338900 Sobic003G338900 Sobic010G076600--Sobic003G338900 Sobic008G036000 Sobic008G036000 Sobic010G076600--Sobic008G036000 Sobic006G095600 Sobic006G095600 Sobic010G076600--Sobic006G095600 Sobic003G296700 Sobic003G296700 Sobic010G076600--Sobic003G296700 Sobic004G305000 Sobic004G305000 Sobic006G184400--Sobic004G305000 Sobic006G184400--Sobic010G076600 Sobic002G217100 Sobic002G217100 Sobic006G184400--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic006G184400--Sobic006G210300 Sobic001G398500 Sobic001G398500 Sobic006G184400--Sobic001G398500 Sobic001G192800 Sobic001G192800 Sobic006G184400--Sobic001G192800 Sobic003G361100 Sobic003G361100 Sobic006G184400--Sobic003G361100 Sobic009G071800 Sobic009G071800 Sobic006G184400--Sobic009G071800 Sobic003G353800 Sobic003G353800 Sobic006G184400--Sobic003G353800 Sobic001G077400 Sobic001G077400 Sobic001G209800--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G209800--Sobic004G280900 Sobic001G209800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G209800--Sobic001G035000 Sobic005G037000 Sobic005G037000 Sobic001G209800--Sobic005G037000 Sobic001G441100 Sobic001G441100 Sobic001G209800--Sobic001G441100 Sobic001G209800--Sobic010G076600 Sobic001G341600 Sobic001G341600 Sobic001G209800--Sobic001G341600 Sobic006G274300 Sobic006G274300 Sobic001G209800--Sobic006G274300 Sobic001G063600 Sobic001G063600 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G476400--Sobic001G473900 Sobic001G476400--Sobic010G076600 Sobic001G081600 Sobic001G081600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic004G283300 Sobic004G283300 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic001G473900--Sobic001G476400 Sobic001G473900--Sobic010G076600 Sobic002G203000 Sobic002G203000 Sobic001G473900--Sobic002G203000 Sobic001G473900--Sobic009G071800 Sobic001G077700 Sobic001G077700 Sobic001G473900--Sobic001G077700 Sobic001G473900--Sobic006G095600 Sobic001G473900--Sobic001G209800 Sobic003G268700 Sobic003G268700 Sobic001G473900--Sobic003G268700 Sobic002G248100 Sobic002G248100 Sobic001G473900--Sobic002G248100 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic009G217600--Sobic001G209800 Sobic009G217600--Sobic005G037000 Sobic009G217600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic009G217600--Sobic002G278500 Sobic001G189700 Sobic001G189700 Sobic003G338900--Sobic001G189700 Sobic003G338900--Sobic010G076600 Sobic003G338900--Sobic009G217600 Sobic002G379400 Sobic002G379400 Sobic003G338900--Sobic002G379400 Sobic003G338900--Sobic001G476400 Sobic003G338900--Sobic001G341600 Sobic001G290400 Sobic001G290400 Sobic003G338900--Sobic001G290400 Sobic003G338900--Sobic003G296700 Sobic003G338900--Sobic001G473900 Sobic002G197600 Sobic002G197600 Sobic008G036000--Sobic002G197600 Sobic008G036000--Sobic001G209800 Sobic008G036000--Sobic003G268700 Sobic008G036000--Sobic010G076600 Sobic003G158600 Sobic003G158600 Sobic008G036000--Sobic003G158600 Sobic001G462800 Sobic001G462800 Sobic008G036000--Sobic001G462800 Sobic008G036000--Sobic001G077400 Sobic004G084100 Sobic004G084100 Sobic008G036000--Sobic004G084100 Sobic002G036100 Sobic002G036100 Sobic008G036000--Sobic002G036100 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400 Sobic001G516600 Sobic001G516600 Sobic003G296700--Sobic001G516600 Sobic009G208800 Sobic009G208800 Sobic003G296700--Sobic009G208800 Sobic009G220200 Sobic009G220200 Sobic003G296700--Sobic009G220200 Sobic003G296700--Sobic001G341600 Sobic003G296700--Sobic009G217600 Sobic003G296700--Sobic010G076600 Sobic003G296700--Sobic006G095600 Sobic002G374100 Sobic002G374100 Sobic003G296700--Sobic002G374100 Sobic002G294700 Sobic002G294700 Sobic003G296700--Sobic002G294700
Octagon: transcription factors


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