Gene annotation
Transcriptome id Sobic.009G215500.4,Sobic.009G215500.3
Synonym Sb09g027090
Functional annotation transcription initiation factor IIB, putative, expressed
UniProt C5YUJ4
Pfam PF07741 PF00382
Panther DB PTHR11618 PTHR11618:SF4
NCBI CDD KOG1598; Transcription initiation factor TFIIIB, Brf1 subunit
KEGG Orthology K15196; BRF1, transcription factor IIIB 90 kDa subunit
Gene Ontology GO:0017025; TBP-class protein binding GO:0008270zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation GO:0006384transcription initiation from RNA polymerase III promoter GO:0000126transcription factor TFIIIB complex


Orthologs (automatic annotation)
TAIR AT3G09360 : Cyclin/Brf1-like TBP-binding protein
RAP-DB (Rice) LOC_Os05g23940.1 : transcription initiation factor IIB, putative, expressed
MaizeGDB (Corn) Zm00025a011577 , Zm00025a013037 , Zm00025a000049 , Zm00025a024347 , Zm00025a030359 , Zm00025a024346 , Zm00025a044419 , Zm00025a044416 , Zm00025a044417 , Zm00025a026364 , Zm00025a004216 , Zm00025a049431 , Zm00025a026363 , Zm00025a031188 , Zm00025a056674 , Zm00025a056673 , Zm00025a036478 , Zm00025a057916
Brachypodium PNT77061 , KQK20872 , KQK20873 , KQK20860
Barley HORVU3Hr1G018440.1 , HORVU3Hr1G019090.4 , HORVU3Hr1G019090.21 , HORVU3Hr1G019090.12 , HORVU3Hr1G019090.13 , HORVU3Hr1G019090.8 , HORVU3Hr1G019090.1 , HORVU3Hr1G019090.9 , HORVU5Hr1G065240.18 , HORVU3Hr1G019090.5 , HORVU3Hr1G019090.20 , HORVU5Hr1G065240.27 , HORVU5Hr1G065240.26 , HORVU5Hr1G065240.25 , HORVU5Hr1G065240.24 , HORVU5Hr1G065240.23 , HORVU5Hr1G065240.22 , HORVU5Hr1G065240.21 , HORVU5Hr1G065240.20 , HORVU3Hr1G019090.10 , HORVU3Hr1G019090.6 , HORVU5Hr1G065240.29 , HORVU5Hr1G065240.28 , HORVU3Hr1G019090.18 , HORVU5Hr1G065240.7 , HORVU5Hr1G065240.8 , HORVU5Hr1G065240.9 , HORVU5Hr1G065240.4 , HORVU5Hr1G065240.5 , HORVU5Hr1G065240.6 , HORVU5Hr1G065240.33 , HORVU5Hr1G065240.1 , HORVU5Hr1G065240.2 , HORVU5Hr1G065240.3 , HORVU3Hr1G019090.16 , HORVU3Hr1G019090.2 , HORVU3Hr1G019090.17 , HORVU3Hr1G019090.3 , HORVU3Hr1G019090.14 , HORVU3Hr1G019090.19 , HORVU3Hr1G019090.7 , HORVU3Hr1G019090.15 , HORVU3Hr1G019090.11 , HORVU5Hr1G065240.38 , HORVU5Hr1G065240.13 , HORVU5Hr1G065240.34 , HORVU5Hr1G065240.35 , HORVU5Hr1G065240.36 , HORVU5Hr1G065240.37 , HORVU5Hr1G065240.30 , HORVU5Hr1G065240.31 , HORVU5Hr1G065240.32 , HORVU5Hr1G065240.19 , HORVU5Hr1G065240.16 , HORVU5Hr1G065240.17 , HORVU5Hr1G065240.14 , HORVU5Hr1G065240.15 , HORVU5Hr1G065240.12 , HORVU5Hr1G065240.39 , HORVU5Hr1G065240.10 , HORVU5Hr1G065240.11
Wheat TraesCS3A02G105000 , TraesCS3A02G105000 , TraesCS3A02G105000 , TraesCS3A02G105000 , TraesCS3A02G105000 , TraesCS1D02G397500 , TraesCS5B02G223600 , TraesCS1A02G389400 , TraesCS5D02G232200 , TraesCS5D02G232200 , TraesCS5A02G225000 , TraesCS4B02G104600 , TraesCS4B02G104600 , TraesCS3B02G123500 , TraesCS3B02G123500 , TraesCS3D02G107200 , TraesCS3D02G107200 , TraesCS3D02G107200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G215500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G530900 expressed protein -
2 Sobic.008G044100 expressed protein -
3 Sobic.004G134200 GTP binding protein, putative, expressed -
4 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
5 Sobic.006G031800 - -
6 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
7 Sobic.001G133000 expressed protein -
8 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
9 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
10 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
11 Sobic.004G244900 expressed protein -
12 Sobic.001G298900 agenet domain containing protein, putative, expressed -
13 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
14 Sobic.002G127550 - -
15 Sobic.001G374100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
16 Sobic.001G062900 peptidase, putative, expressed K01301: N-acetylated-alpha-linked acidic dipeptidase
17 Sobic.003G110800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
18 Sobic.009G201300 - -
19 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
20 Sobic.007G090403 - -


Gene co-expression network
sample Sobic009G215500 Sobic009G215500 Sobic001G530900 Sobic001G530900 Sobic009G215500--Sobic001G530900 Sobic008G044100 Sobic008G044100 Sobic009G215500--Sobic008G044100 Sobic004G134200 Sobic004G134200 Sobic009G215500--Sobic004G134200 Sobic003G155100 Sobic003G155100 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic006G219600 Sobic006G219600 Sobic009G215500--Sobic006G219600 Sobic001G133000 Sobic001G133000 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700 Sobic010G002700 Sobic010G002700 Sobic001G530900--Sobic010G002700 Sobic001G530900--Sobic009G215500 Sobic001G378100 Sobic001G378100 Sobic001G530900--Sobic001G378100 Sobic007G185700 Sobic007G185700 Sobic001G530900--Sobic007G185700 Sobic005G118400 Sobic005G118400 Sobic001G530900--Sobic005G118400 Sobic005G084500 Sobic005G084500 Sobic001G530900--Sobic005G084500 Sobic003G332700 Sobic003G332700 Sobic001G530900--Sobic003G332700 Sobic001G530900--Sobic001G465700 Sobic003G217700 Sobic003G217700 Sobic001G530900--Sobic003G217700 Sobic010G010700 Sobic010G010700 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic004G134200--Sobic008G044100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic004G134200--Sobic010G010700 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic006G031800--Sobic009G215500 Sobic006G031800--Sobic001G465700 Sobic007G136800 Sobic007G136800 Sobic006G031800--Sobic007G136800 Sobic003G168100 Sobic003G168100 Sobic006G031800--Sobic003G168100 Sobic006G031800--Sobic003G217700 Sobic003G110800 Sobic003G110800 Sobic006G031800--Sobic003G110800 Sobic006G128300 Sobic006G128300 Sobic006G031800--Sobic006G128300 Sobic006G038500 Sobic006G038500 Sobic006G031800--Sobic006G038500 Sobic002G218500 Sobic002G218500 Sobic006G031800--Sobic002G218500 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic006G219600--Sobic005G084500 Sobic001G133000--Sobic005G106600 Sobic001G133000--Sobic006G219600 Sobic009G038900 Sobic009G038900 Sobic001G133000--Sobic009G038900 Sobic003G220100 Sobic003G220100 Sobic001G133000--Sobic003G220100 Sobic001G133000--Sobic006G133900 Sobic001G333800 Sobic001G333800 Sobic001G133000--Sobic001G333800 Sobic001G243200 Sobic001G243200 Sobic001G133000--Sobic001G243200 Sobic001G133000--Sobic009G201300 Sobic001G133000--Sobic009G215500 Sobic001G465700--Sobic006G038500 Sobic010G043800 Sobic010G043800 Sobic001G465700--Sobic010G043800 Sobic005G111550 Sobic005G111550 Sobic001G465700--Sobic005G111550 Sobic003G442700 Sobic003G442700 Sobic001G465700--Sobic003G442700 Sobic008G001900 Sobic008G001900 Sobic001G465700--Sobic008G001900 Sobic004G294700 Sobic004G294700 Sobic001G465700--Sobic004G294700 Sobic001G465700--Sobic001G530900 Sobic004G298900 Sobic004G298900 Sobic001G465700--Sobic004G298900 Sobic001G465700--Sobic006G031800 Sobic006G050700--Sobic003G155100 Sobic006G050700--Sobic006G219600 Sobic006G050700--Sobic008G001200 Sobic006G050700--Sobic009G201300 Sobic002G346200 Sobic002G346200 Sobic006G050700--Sobic002G346200 Sobic004G042200 Sobic004G042200 Sobic006G050700--Sobic004G042200 Sobic006G050700--Sobic010G206900 Sobic006G050700--Sobic001G230000 Sobic001G527800 Sobic001G527800 Sobic006G050700--Sobic001G527800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.