Gene annotation
Transcriptome id Sobic.008G118600.1,Sobic.008G118600.2
Synonym
Functional annotation riboflavin synthase alpha chain, putative, expressed
UniProt A0A1B6PDK9
Pfam PF00677
Panther DB PTHR21098 PTHR21098:SF0
NCBI CDD KOG3310; Riboflavin synthase alpha chain
KEGG Orthology K00793; ribE, riboflavin synthase
Gene Ontology GO:0009231; riboflavin biosynthetic process GO:0004746riboflavin synthase activity


Orthologs (automatic annotation)
TAIR AT2G20690 : lumazine-binding family protein
RAP-DB (Rice) LOC_Os12g35580.1 : riboflavin synthase alpha chain, putative, expressed
MaizeGDB (Corn) Zm00025a054326 , Zm00025a054349
Brachypodium KQJ86449
Barley HORVU5Hr1G024590.1
Wheat -
Populus -


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cDNA sequences
Sobic.008G118600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G124100 EMB1303, putative, expressed -
2 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
3 Sobic.004G028000 expressed protein -
4 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
5 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
6 Sobic.005G055000 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
7 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
8 Sobic.004G182500 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed K18121: glyoxylate/succinic semialdehyde reductase
9 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
10 Sobic.009G178200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
11 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
12 Sobic.002G333100 transmembrane protein, putative, expressed -
13 Sobic.003G392600 expressed protein -
14 Sobic.009G209100 plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
15 Sobic.001G010800 methionyl-tRNA synthetase, putative, expressed -
16 Sobic.010G024100 tRNA 2-phosphotransferase 1, putative, expressed K10669: TRPT1, 2'-phosphotransferase
17 Sobic.001G416300 expressed protein -
18 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
19 Sobic.001G067300 histidinol dehydrogenase, chloroplast precursor, putative, expressed K00013: histidinol dehydrogenase
20 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4


Gene co-expression network
sample Sobic008G118600 Sobic008G118600 Sobic004G124100 Sobic004G124100 Sobic008G118600--Sobic004G124100 Sobic009G124000 Sobic009G124000 Sobic008G118600--Sobic009G124000 Sobic004G028000 Sobic004G028000 Sobic008G118600--Sobic004G028000 Sobic004G248900 Sobic004G248900 Sobic008G118600--Sobic004G248900 Sobic003G216500 Sobic003G216500 Sobic008G118600--Sobic003G216500 Sobic005G055000 Sobic005G055000 Sobic008G118600--Sobic005G055000 Sobic001G376700 Sobic001G376700 Sobic008G118600--Sobic001G376700 Sobic004G182500 Sobic004G182500 Sobic008G118600--Sobic004G182500 Sobic006G020900 Sobic006G020900 Sobic008G118600--Sobic006G020900 Sobic004G291400 Sobic004G291400 Sobic004G124100--Sobic004G291400 Sobic001G468600 Sobic001G468600 Sobic004G124100--Sobic001G468600 Sobic006G002201 Sobic006G002201 Sobic004G124100--Sobic006G002201 Sobic004G124100--Sobic004G248900 Sobic006G010400 Sobic006G010400 Sobic004G124100--Sobic006G010400 Sobic006G157000 Sobic006G157000 Sobic004G124100--Sobic006G157000 Sobic004G124100--Sobic008G118600 Sobic005G105500 Sobic005G105500 Sobic004G124100--Sobic005G105500 Sobic008G103800 Sobic008G103800 Sobic004G124100--Sobic008G103800 Sobic001G486700 Sobic001G486700 Sobic009G124000--Sobic001G486700 Sobic008G183700 Sobic008G183700 Sobic009G124000--Sobic008G183700 Sobic009G124000--Sobic001G376700 Sobic004G275600 Sobic004G275600 Sobic009G124000--Sobic004G275600 Sobic001G401700 Sobic001G401700 Sobic009G124000--Sobic001G401700 Sobic007G208300 Sobic007G208300 Sobic009G124000--Sobic007G208300 Sobic003G292300 Sobic003G292300 Sobic009G124000--Sobic003G292300 Sobic002G244500 Sobic002G244500 Sobic009G124000--Sobic002G244500 Sobic010G221600 Sobic010G221600 Sobic009G124000--Sobic010G221600 Sobic004G060600 Sobic004G060600 Sobic004G028000--Sobic004G060600 Sobic004G028000--Sobic005G055000 Sobic001G417900 Sobic001G417900 Sobic004G028000--Sobic001G417900 Sobic003G325500 Sobic003G325500 Sobic004G028000--Sobic003G325500 Sobic007G117500 Sobic007G117500 Sobic004G028000--Sobic007G117500 Sobic004G202700 Sobic004G202700 Sobic004G028000--Sobic004G202700 Sobic003G299000 Sobic003G299000 Sobic004G028000--Sobic003G299000 Sobic003G369500 Sobic003G369500 Sobic004G028000--Sobic003G369500 Sobic001G263000 Sobic001G263000 Sobic004G028000--Sobic001G263000 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic001G129400 Sobic001G129400 Sobic004G248900--Sobic001G129400 Sobic007G143000 Sobic007G143000 Sobic004G248900--Sobic007G143000 Sobic001G060300 Sobic001G060300 Sobic004G248900--Sobic001G060300 Sobic010G013900 Sobic010G013900 Sobic004G248900--Sobic010G013900 Sobic001G117400 Sobic001G117400 Sobic004G248900--Sobic001G117400 Sobic003G326900 Sobic003G326900 Sobic004G248900--Sobic003G326900 Sobic001G404100 Sobic001G404100 Sobic004G248900--Sobic001G404100 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic008G051900 Sobic008G051900 Sobic005G055000--Sobic008G051900 Sobic006G237200 Sobic006G237200 Sobic005G055000--Sobic006G237200 Sobic005G055000--Sobic004G028000 Sobic005G055000--Sobic003G216500 Sobic005G055000--Sobic002G410700 Sobic005G055000--Sobic003G325500 Sobic009G207100 Sobic009G207100 Sobic005G055000--Sobic009G207100 Sobic009G168000 Sobic009G168000 Sobic005G055000--Sobic009G168000 Sobic001G526100 Sobic001G526100 Sobic005G055000--Sobic001G526100 Sobic004G296800 Sobic004G296800 Sobic001G376700--Sobic004G296800 Sobic006G084500 Sobic006G084500 Sobic001G376700--Sobic006G084500 Sobic004G044200 Sobic004G044200 Sobic001G376700--Sobic004G044200 Sobic001G376700--Sobic009G124000 Sobic003G420900 Sobic003G420900 Sobic001G376700--Sobic003G420900 Sobic001G376700--Sobic003G292300 Sobic009G180800 Sobic009G180800 Sobic001G376700--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic004G182500--Sobic003G216500 Sobic003G103400 Sobic003G103400 Sobic004G182500--Sobic003G103400 Sobic004G182500--Sobic002G073800 Sobic008G093200 Sobic008G093200 Sobic004G182500--Sobic008G093200 Sobic010G258500 Sobic010G258500 Sobic004G182500--Sobic010G258500 Sobic004G182500--Sobic001G376700 Sobic006G281200 Sobic006G281200 Sobic004G182500--Sobic006G281200 Sobic004G182500--Sobic003G325500 Sobic001G215500 Sobic001G215500 Sobic004G182500--Sobic001G215500 Sobic006G020900--Sobic001G473400 Sobic006G020900--Sobic002G410700 Sobic003G388700 Sobic003G388700 Sobic006G020900--Sobic003G388700 Sobic006G020900--Sobic005G105500 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic009G256000 Sobic009G256000 Sobic006G020900--Sobic009G256000 Sobic003G392600 Sobic003G392600 Sobic006G020900--Sobic003G392600 Sobic006G020900--Sobic009G240700
Octagon: transcription factors


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