Gene annotation
Transcriptome id Sobic.008G116100.1
Synonym EMB3004, MEE32
Functional annotation bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
UniProt A0A1B6PDJ7
Pfam PF01488 PF08501 PF01487
Panther DB PTHR21089 PTHR21089:SF11
NCBI CDD KOG0692; Pentafunctional AROM protein
KEGG Orthology K13832; aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
Gene Ontology GO:0004764; shikimate 3-dehydrogenase (NADP+) activity GO:00038553-dehydroquinate dehydratase activity


Orthologs (automatic annotation)
TAIR AT3G06350 : dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
RAP-DB (Rice) LOC_Os12g34874.3 : bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a025545
Brachypodium KQJ86492
Barley HORVU5Hr1G026170.20 , HORVU0Hr1G035760.3 , HORVU0Hr1G035760.2 , HORVU0Hr1G035760.1 , HORVU5Hr1G026170.17 , HORVU5Hr1G026170.16 , HORVU5Hr1G026170.15 , HORVU5Hr1G026170.14 , HORVU5Hr1G026170.13 , HORVU5Hr1G026170.12 , HORVU5Hr1G026170.11 , HORVU5Hr1G026170.10 , HORVU5Hr1G026170.19 , HORVU5Hr1G026170.18 , HORVU5Hr1G026170.9 , HORVU5Hr1G026170.8 , HORVU5Hr1G026170.7 , HORVU5Hr1G026170.6 , HORVU5Hr1G026170.5 , HORVU5Hr1G026170.4 , HORVU5Hr1G026170.3 , HORVU5Hr1G026170.2 , HORVU5Hr1G026170.1
Wheat TraesCS5A02G096500 , TraesCS5A02G096500 , TraesCS5A02G096500 , TraesCS5A02G096500 , TraesCS5D02G109200 , TraesCS5D02G109200
Populus PNT25666


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cDNA sequences
Sobic.008G116100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G041200 cytochrome P450, putative, expressed -
2 Sobic.009G033500 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.010G084800 - -
4 Sobic.002G097601 - -
5 Sobic.004G210000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
6 Sobic.005G176875 - -
7 Sobic.004G339900 expressed protein -
8 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
9 Sobic.010G047300 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.008G109600 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
11 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
12 Sobic.003G232332 - -
13 Sobic.006G046300 histidine kinase, putative, expressed -
14 Sobic.010G195450 - -
15 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7
16 Sobic.001G425900 EDM2, putative, expressed -
17 Sobic.009G132650 - -
18 Sobic.004G071050 - -
19 Sobic.003G430100 Phosphoesterase family protein(PubMedID : 24906815)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
20 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain


Gene co-expression network
sample Sobic008G116100 Sobic008G116100 Sobic007G041200 Sobic007G041200 Sobic008G116100--Sobic007G041200 Sobic009G033500 Sobic009G033500 Sobic008G116100--Sobic009G033500 Sobic010G084800 Sobic010G084800 Sobic008G116100--Sobic010G084800 Sobic002G097601 Sobic002G097601 Sobic008G116100--Sobic002G097601 Sobic004G210000 Sobic004G210000 Sobic008G116100--Sobic004G210000 Sobic005G176875 Sobic005G176875 Sobic008G116100--Sobic005G176875 Sobic004G339900 Sobic004G339900 Sobic008G116100--Sobic004G339900 Sobic006G186300 Sobic006G186300 Sobic008G116100--Sobic006G186300 Sobic010G047300 Sobic010G047300 Sobic008G116100--Sobic010G047300 Sobic007G041200--Sobic008G116100 Sobic007G041200--Sobic009G033500 Sobic007G041200--Sobic010G084800 Sobic007G041200--Sobic010G047300 Sobic007G041200--Sobic002G097601 Sobic007G041200--Sobic006G186300 Sobic007G091200 Sobic007G091200 Sobic007G041200--Sobic007G091200 Sobic008G109600 Sobic008G109600 Sobic007G041200--Sobic008G109600 Sobic010G060100 Sobic010G060100 Sobic007G041200--Sobic010G060100 Sobic009G033500--Sobic007G091200 Sobic009G033500--Sobic007G041200 Sobic009G033500--Sobic010G060100 Sobic001G425900 Sobic001G425900 Sobic009G033500--Sobic001G425900 Sobic010G118200 Sobic010G118200 Sobic009G033500--Sobic010G118200 Sobic009G033500--Sobic010G084800 Sobic007G205400 Sobic007G205400 Sobic009G033500--Sobic007G205400 Sobic004G133600 Sobic004G133600 Sobic009G033500--Sobic004G133600 Sobic001G518700 Sobic001G518700 Sobic009G033500--Sobic001G518700 Sobic010G084800--Sobic010G047300 Sobic010G084800--Sobic008G109600 Sobic002G161600 Sobic002G161600 Sobic010G084800--Sobic002G161600 Sobic001G274025 Sobic001G274025 Sobic010G084800--Sobic001G274025 Sobic006G264800 Sobic006G264800 Sobic010G084800--Sobic006G264800 Sobic009G021400 Sobic009G021400 Sobic010G084800--Sobic009G021400 Sobic010G084800--Sobic007G205400 Sobic010G084800--Sobic010G060100 Sobic002G409300 Sobic002G409300 Sobic010G084800--Sobic002G409300 Sobic001G069100 Sobic001G069100 Sobic002G097601--Sobic001G069100 Sobic002G097601--Sobic007G041200 Sobic001G261700 Sobic001G261700 Sobic002G097601--Sobic001G261700 Sobic004G322550 Sobic004G322550 Sobic002G097601--Sobic004G322550 Sobic002G097601--Sobic005G176875 Sobic002G097601--Sobic010G084800 Sobic002G097601--Sobic010G047300 Sobic009G169050 Sobic009G169050 Sobic002G097601--Sobic009G169050 Sobic002G097601--Sobic008G116100 Sobic004G196800 Sobic004G196800 Sobic004G210000--Sobic004G196800 Sobic003G430100 Sobic003G430100 Sobic004G210000--Sobic003G430100 Sobic004G210000--Sobic008G116100 Sobic010G020100 Sobic010G020100 Sobic004G210000--Sobic010G020100 Sobic004G210000--Sobic007G041200 Sobic004G210000--Sobic010G084800 Sobic007G150700 Sobic007G150700 Sobic004G210000--Sobic007G150700 Sobic004G210000--Sobic010G047300 Sobic004G210000--Sobic008G109600 Sobic008G184500 Sobic008G184500 Sobic005G176875--Sobic008G184500 Sobic001G269650 Sobic001G269650 Sobic005G176875--Sobic001G269650 Sobic002G015500 Sobic002G015500 Sobic005G176875--Sobic002G015500 Sobic002G097100 Sobic002G097100 Sobic005G176875--Sobic002G097100 Sobic001G495700 Sobic001G495700 Sobic005G176875--Sobic001G495700 Sobic003G319050 Sobic003G319050 Sobic005G176875--Sobic003G319050 Sobic004G071100 Sobic004G071100 Sobic005G176875--Sobic004G071100 Sobic010G133150 Sobic010G133150 Sobic005G176875--Sobic010G133150 Sobic007G199500 Sobic007G199500 Sobic005G176875--Sobic007G199500 Sobic002G420400 Sobic002G420400 Sobic004G339900--Sobic002G420400 Sobic004G071050 Sobic004G071050 Sobic004G339900--Sobic004G071050 Sobic001G485200 Sobic001G485200 Sobic004G339900--Sobic001G485200 Sobic001G194100 Sobic001G194100 Sobic004G339900--Sobic001G194100 Sobic010G152000 Sobic010G152000 Sobic004G339900--Sobic010G152000 Sobic004G339900--Sobic007G041200 Sobic004G339900--Sobic008G116100 Sobic004G065800 Sobic004G065800 Sobic004G339900--Sobic004G065800 Sobic004G163700 Sobic004G163700 Sobic004G339900--Sobic004G163700 Sobic006G186300--Sobic010G047300 Sobic006G186300--Sobic007G041200 Sobic002G122000 Sobic002G122000 Sobic006G186300--Sobic002G122000 Sobic004G075700 Sobic004G075700 Sobic006G186300--Sobic004G075700 Sobic002G230400 Sobic002G230400 Sobic006G186300--Sobic002G230400 Sobic006G186300--Sobic010G084800 Sobic001G305100 Sobic001G305100 Sobic006G186300--Sobic001G305100 Sobic005G131800 Sobic005G131800 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800 Sobic009G058300 Sobic009G058300 Sobic010G047300--Sobic009G058300 Sobic010G047300--Sobic006G264800 Sobic002G172100 Sobic002G172100 Sobic010G047300--Sobic002G172100 Sobic001G489075 Sobic001G489075 Sobic010G047300--Sobic001G489075 Sobic010G047300--Sobic008G109600 Sobic002G108300 Sobic002G108300 Sobic010G047300--Sobic002G108300 Sobic002G172200 Sobic002G172200 Sobic010G047300--Sobic002G172200 Sobic001G284700 Sobic001G284700 Sobic010G047300--Sobic001G284700 Sobic002G015400 Sobic002G015400 Sobic010G047300--Sobic002G015400
Octagon: transcription factors


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