Gene annotation
Transcriptome id Sobic.008G007000.1
Synonym ATSWC6, Sb08g000730, SEF
Functional annotation HIT zinc finger domain containing protein, expressed
UniProt C5YQ47
Pfam PF04438
Panther DB PTHR13093
NCBI CDD KOG3362; Predicted BBOX Zn-finger protein
KEGG Orthology K11663; ZNHIT1, zinc finger HIT domain-containing protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37055 : HIT-type Zinc finger family protein
RAP-DB (Rice) LOC_Os03g25260.1 : HIT zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033286
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
2 Sobic.009G031500 agenet domain containing protein, putative, expressed -
3 Sobic.002G370400 expressed protein -
4 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
5 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
6 Sobic.009G167100 TBC domain containing protein, expressed -
7 Sobic.001G051300 BEE 1, putative, expressed -
8 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
9 Sobic.007G219200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
10 Sobic.010G250800 DNA binding protein, putative, expressed -
11 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
12 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
14 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
15 Sobic.010G029000 expressed protein -
16 Sobic.007G000700 choline transporter-related, putative, expressed K15377: solute carrier family 44 (choline transporter-like protein), member 2/4/5
17 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
18 Sobic.003G077500 expressed protein -
19 Sobic.001G231200 expressed protein -
20 Sobic.001G540700 expressed protein -


Gene co-expression network
sample Sobic008G007000 Sobic008G007000 Sobic001G487200 Sobic001G487200 Sobic008G007000--Sobic001G487200 Sobic009G031500 Sobic009G031500 Sobic008G007000--Sobic009G031500 Sobic002G370400 Sobic002G370400 Sobic008G007000--Sobic002G370400 Sobic004G315700 Sobic004G315700 Sobic008G007000--Sobic004G315700 Sobic009G253400 Sobic009G253400 Sobic008G007000--Sobic009G253400 Sobic009G167100 Sobic009G167100 Sobic008G007000--Sobic009G167100 Sobic001G051300 Sobic001G051300 Sobic008G007000--Sobic001G051300 Sobic006G084300 Sobic006G084300 Sobic008G007000--Sobic006G084300 Sobic007G219200 Sobic007G219200 Sobic008G007000--Sobic007G219200 Sobic001G487200--Sobic004G315700 Sobic009G212100 Sobic009G212100 Sobic001G487200--Sobic009G212100 Sobic001G369800 Sobic001G369800 Sobic001G487200--Sobic001G369800 Sobic001G231200 Sobic001G231200 Sobic001G487200--Sobic001G231200 Sobic001G487200--Sobic002G370400 Sobic003G226700 Sobic003G226700 Sobic001G487200--Sobic003G226700 Sobic001G540700 Sobic001G540700 Sobic001G487200--Sobic001G540700 Sobic001G296800 Sobic001G296800 Sobic001G487200--Sobic001G296800 Sobic007G084200 Sobic007G084200 Sobic001G487200--Sobic007G084200 Sobic004G207000 Sobic004G207000 Sobic009G031500--Sobic004G207000 Sobic009G031500--Sobic001G540700 Sobic006G126600 Sobic006G126600 Sobic009G031500--Sobic006G126600 Sobic007G125700 Sobic007G125700 Sobic009G031500--Sobic007G125700 Sobic009G031500--Sobic001G487200 Sobic003G274400 Sobic003G274400 Sobic009G031500--Sobic003G274400 Sobic003G077500 Sobic003G077500 Sobic009G031500--Sobic003G077500 Sobic004G206300 Sobic004G206300 Sobic009G031500--Sobic004G206300 Sobic003G027800 Sobic003G027800 Sobic009G031500--Sobic003G027800 Sobic002G370400--Sobic001G487200 Sobic002G370400--Sobic001G231200 Sobic002G370400--Sobic004G315700 Sobic006G272500 Sobic006G272500 Sobic002G370400--Sobic006G272500 Sobic002G370400--Sobic009G212100 Sobic002G370400--Sobic001G296800 Sobic009G124800 Sobic009G124800 Sobic002G370400--Sobic009G124800 Sobic003G153900 Sobic003G153900 Sobic002G370400--Sobic003G153900 Sobic010G211800 Sobic010G211800 Sobic002G370400--Sobic010G211800 Sobic004G315700--Sobic001G487200 Sobic004G315700--Sobic009G212100 Sobic004G315700--Sobic001G296800 Sobic009G052100 Sobic009G052100 Sobic004G315700--Sobic009G052100 Sobic004G315700--Sobic006G084300 Sobic003G420300 Sobic003G420300 Sobic004G315700--Sobic003G420300 Sobic006G218900 Sobic006G218900 Sobic004G315700--Sobic006G218900 Sobic003G345000 Sobic003G345000 Sobic004G315700--Sobic003G345000 Sobic004G315700--Sobic001G540700 Sobic002G218700 Sobic002G218700 Sobic009G253400--Sobic002G218700 Sobic010G170900 Sobic010G170900 Sobic009G253400--Sobic010G170900 Sobic001G261585 Sobic001G261585 Sobic009G253400--Sobic001G261585 Sobic009G253400--Sobic008G007000 Sobic002G183300 Sobic002G183300 Sobic009G253400--Sobic002G183300 Sobic009G055400 Sobic009G055400 Sobic009G253400--Sobic009G055400 Sobic003G347300 Sobic003G347300 Sobic009G253400--Sobic003G347300 Sobic001G372900 Sobic001G372900 Sobic009G253400--Sobic001G372900 Sobic002G132600 Sobic002G132600 Sobic009G253400--Sobic002G132600 Sobic010G250800 Sobic010G250800 Sobic009G167100--Sobic010G250800 Sobic009G061000 Sobic009G061000 Sobic009G167100--Sobic009G061000 Sobic006G257200 Sobic006G257200 Sobic009G167100--Sobic006G257200 Sobic001G385400 Sobic001G385400 Sobic009G167100--Sobic001G385400 Sobic008G015200 Sobic008G015200 Sobic009G167100--Sobic008G015200 Sobic002G320600 Sobic002G320600 Sobic009G167100--Sobic002G320600 Sobic009G167100--Sobic003G027800 Sobic009G167100--Sobic009G052100 Sobic008G192700 Sobic008G192700 Sobic009G167100--Sobic008G192700 Sobic003G289800 Sobic003G289800 Sobic001G051300--Sobic003G289800 Sobic002G383100 Sobic002G383100 Sobic001G051300--Sobic002G383100 Sobic007G139500 Sobic007G139500 Sobic001G051300--Sobic007G139500 Sobic009G087000 Sobic009G087000 Sobic001G051300--Sobic009G087000 Sobic006G071628 Sobic006G071628 Sobic001G051300--Sobic006G071628 Sobic003G179500 Sobic003G179500 Sobic001G051300--Sobic003G179500 Sobic010G147700 Sobic010G147700 Sobic001G051300--Sobic010G147700 Sobic003G017500 Sobic003G017500 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000 Sobic006G084300--Sobic004G315700 Sobic001G199500 Sobic001G199500 Sobic006G084300--Sobic001G199500 Sobic008G090000 Sobic008G090000 Sobic006G084300--Sobic008G090000 Sobic006G084300--Sobic009G212100 Sobic006G084300--Sobic006G071628 Sobic001G425700 Sobic001G425700 Sobic006G084300--Sobic001G425700 Sobic003G104100 Sobic003G104100 Sobic006G084300--Sobic003G104100 Sobic006G281900 Sobic006G281900 Sobic006G084300--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic006G084300--Sobic003G024000 Sobic002G219900 Sobic002G219900 Sobic007G219200--Sobic002G219900 Sobic001G115500 Sobic001G115500 Sobic007G219200--Sobic001G115500 Sobic007G219200--Sobic003G027800 Sobic004G249300 Sobic004G249300 Sobic007G219200--Sobic004G249300 Sobic007G219200--Sobic003G077500 Sobic008G125000 Sobic008G125000 Sobic007G219200--Sobic008G125000 Sobic001G435201 Sobic001G435201 Sobic007G219200--Sobic001G435201 Sobic001G382400 Sobic001G382400 Sobic007G219200--Sobic001G382400 Sobic002G394800 Sobic002G394800 Sobic007G219200--Sobic002G394800
Octagon: transcription factors


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