Gene annotation
Transcriptome id Sobic.006G196400.1
Synonym PUB23, Sb06g026870
Functional annotation U-box, putative, expressed
UniProt C5YEY9
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT2G35930 : plant U-box 23
RAP-DB (Rice) LOC_Os04g49970.1 : U-box, putative, expressed
MaizeGDB (Corn) Zm00025a010002 , Zm00025a056714
Brachypodium KQJ84286
Barley HORVU2Hr1G105720.3 , HORVU2Hr1G105720.2 , HORVU6Hr1G066870.1 , HORVU6Hr1G066870.3 , HORVU6Hr1G066870.2 , HORVU6Hr1G066870.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G031100 CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed -
2 Sobic.007G090600 CSLC3 - cellulose synthase-like family C, expressed -
3 Sobic.005G080600 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
4 Sobic.003G240400 leaf senescence related protein, putative, expressed -
5 Sobic.003G215300 pleiotropic drug resistance protein, putative, expressed -
6 Sobic.002G115600 membrane protein, putative, expressed -
7 Sobic.005G175900 expressed protein -
8 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
9 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
10 Sobic.001G263300 glycosyltransferase, putative, expressed K18207: POMGNT2, protein O-mannose beta-1,4-N-acetylglucosaminyltransferase
11 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
13 Sobic.004G014600 disease resistance protein RGA2, putative, expressed -
14 Sobic.004G322000 hypro1, putative, expressed -
15 Sobic.009G259800 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
16 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.004G119800 expansin precursor, putative, expressed -
18 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
19 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
20 Sobic.003G441601 - -


Gene co-expression network
sample Sobic006G196400 Sobic006G196400 Sobic006G031100 Sobic006G031100 Sobic006G196400--Sobic006G031100 Sobic007G090600 Sobic007G090600 Sobic006G196400--Sobic007G090600 Sobic005G080600 Sobic005G080600 Sobic006G196400--Sobic005G080600 Sobic003G240400 Sobic003G240400 Sobic006G196400--Sobic003G240400 Sobic003G215300 Sobic003G215300 Sobic006G196400--Sobic003G215300 Sobic002G115600 Sobic002G115600 Sobic006G196400--Sobic002G115600 Sobic005G175900 Sobic005G175900 Sobic006G196400--Sobic005G175900 Sobic010G082000 Sobic010G082000 Sobic006G196400--Sobic010G082000 Sobic006G205700 Sobic006G205700 Sobic006G196400--Sobic006G205700 Sobic006G031100--Sobic007G090600 Sobic006G031100--Sobic003G215300 Sobic006G031100--Sobic006G196400 Sobic002G029600 Sobic002G029600 Sobic006G031100--Sobic002G029600 Sobic004G014600 Sobic004G014600 Sobic006G031100--Sobic004G014600 Sobic005G182800 Sobic005G182800 Sobic006G031100--Sobic005G182800 Sobic006G085700 Sobic006G085700 Sobic006G031100--Sobic006G085700 Sobic004G322000 Sobic004G322000 Sobic006G031100--Sobic004G322000 Sobic006G031100--Sobic006G205700 Sobic007G090600--Sobic006G031100 Sobic003G282300 Sobic003G282300 Sobic007G090600--Sobic003G282300 Sobic007G090600--Sobic004G322000 Sobic007G090600--Sobic003G215300 Sobic007G090600--Sobic004G014600 Sobic007G090600--Sobic006G196400 Sobic007G090600--Sobic006G205700 Sobic007G090600--Sobic003G240400 Sobic007G090600--Sobic002G115600 Sobic007G206800 Sobic007G206800 Sobic005G080600--Sobic007G206800 Sobic005G080600--Sobic006G196400 Sobic007G220400 Sobic007G220400 Sobic005G080600--Sobic007G220400 Sobic002G391400 Sobic002G391400 Sobic005G080600--Sobic002G391400 Sobic009G259800 Sobic009G259800 Sobic005G080600--Sobic009G259800 Sobic004G119800 Sobic004G119800 Sobic005G080600--Sobic004G119800 Sobic002G334000 Sobic002G334000 Sobic005G080600--Sobic002G334000 Sobic002G068000 Sobic002G068000 Sobic005G080600--Sobic002G068000 Sobic010G241900 Sobic010G241900 Sobic005G080600--Sobic010G241900 Sobic003G240400--Sobic010G082000 Sobic003G240400--Sobic003G215300 Sobic001G263300 Sobic001G263300 Sobic003G240400--Sobic001G263300 Sobic003G240400--Sobic006G196400 Sobic003G240400--Sobic007G090600 Sobic010G152400 Sobic010G152400 Sobic003G240400--Sobic010G152400 Sobic006G028500 Sobic006G028500 Sobic003G240400--Sobic006G028500 Sobic003G000100 Sobic003G000100 Sobic003G240400--Sobic003G000100 Sobic008G035800 Sobic008G035800 Sobic003G240400--Sobic008G035800 Sobic003G215300--Sobic007G090600 Sobic003G215300--Sobic006G031100 Sobic003G215300--Sobic002G115600 Sobic003G215300--Sobic003G240400 Sobic003G215300--Sobic006G196400 Sobic003G215300--Sobic001G263300 Sobic007G073000 Sobic007G073000 Sobic003G215300--Sobic007G073000 Sobic001G503000 Sobic001G503000 Sobic003G215300--Sobic001G503000 Sobic003G215300--Sobic002G029600 Sobic002G115600--Sobic003G215300 Sobic002G115600--Sobic006G196400 Sobic002G115600--Sobic001G263300 Sobic002G115600--Sobic007G090600 Sobic005G052700 Sobic005G052700 Sobic002G115600--Sobic005G052700 Sobic002G115600--Sobic002G391400 Sobic002G118900 Sobic002G118900 Sobic002G115600--Sobic002G118900 Sobic002G115600--Sobic006G205700 Sobic002G115600--Sobic005G175900 Sobic005G175900--Sobic001G263300 Sobic005G175900--Sobic006G196400 Sobic005G175900--Sobic002G115600 Sobic005G175900--Sobic003G215300 Sobic005G175900--Sobic007G090600 Sobic005G175900--Sobic006G031100 Sobic002G003400 Sobic002G003400 Sobic005G175900--Sobic002G003400 Sobic005G175900--Sobic010G082000 Sobic005G175900--Sobic003G240400 Sobic006G092700 Sobic006G092700 Sobic010G082000--Sobic006G092700 Sobic010G082000--Sobic003G240400 Sobic006G135300 Sobic006G135300 Sobic010G082000--Sobic006G135300 Sobic010G082000--Sobic010G152400 Sobic010G082000--Sobic006G028500 Sobic010G082000--Sobic003G215300 Sobic006G019700 Sobic006G019700 Sobic010G082000--Sobic006G019700 Sobic010G082000--Sobic007G073000 Sobic010G082000--Sobic006G196400 Sobic006G205700--Sobic002G391400 Sobic003G441800 Sobic003G441800 Sobic006G205700--Sobic003G441800 Sobic004G106100 Sobic004G106100 Sobic006G205700--Sobic004G106100 Sobic003G167300 Sobic003G167300 Sobic006G205700--Sobic003G167300 Sobic006G205700--Sobic010G241900 Sobic005G046400 Sobic005G046400 Sobic006G205700--Sobic005G046400 Sobic006G205700--Sobic007G206800 Sobic003G441601 Sobic003G441601 Sobic006G205700--Sobic003G441601 Sobic003G095100 Sobic003G095100 Sobic006G205700--Sobic003G095100
Octagon: transcription factors


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