Gene annotation
Transcriptome id Sobic.004G294700.1,Sobic.004G294700.2,Sobic.004G294700.3,Sobic.004G294700.5,Sobic.004G294700.4,Sobic.004G294700.6,Sobic.004G294700.7
Synonym Sb04g032860
Functional annotation F-box family protein, putative, expressed
UniProt C5XRX5 , A0A1Z5RQ58 , A0A1Z5RQ32
Pfam PF12937
Panther DB PTHR24006
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K10268; F-box and leucine-rich repeat protein 2/20
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G07670 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os02g44104.3,LOC_Os02g44104.1,LOC_Os02g44104.2 : F-box family protein, putative, expressed
MaizeGDB (Corn) Zm00025a020875
Brachypodium PNT69177
Barley HORVU6Hr1G063100.4 , HORVU6Hr1G063100.3 , HORVU6Hr1G063100.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G294700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
2 Sobic.002G145000 DNA-directed RNA polymerase subunit, putative, expressed K03011: RPB3, DNA-directed RNA polymerase II subunit RPB3
3 Sobic.004G182900 PHD finger protein, putative, expressed -
4 Sobic.003G168100 BZIP protein, putative, expressed -
5 Sobic.006G031800 - -
6 Sobic.006G271800 potasium efflux antiporter protein, putative, expressed -
7 Sobic.006G181000 -(PubMedID : 23915383)@PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
8 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
9 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
10 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
11 Sobic.002G431400 - -
12 Sobic.007G029700 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
13 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
14 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
15 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
16 Sobic.005G100600 bZIP transcription factor domain containing protein, expressed -
17 Sobic.009G002300 expressed protein -
18 Sobic.003G442700 - -
19 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
20 Sobic.006G216100 expressed protein -


Gene co-expression network
sample Sobic004G294700 Sobic004G294700 Sobic001G465700 Sobic001G465700 Sobic004G294700--Sobic001G465700 Sobic002G145000 Sobic002G145000 Sobic004G294700--Sobic002G145000 Sobic004G182900 Sobic004G182900 Sobic004G294700--Sobic004G182900 Sobic003G168100 Sobic003G168100 Sobic004G294700--Sobic003G168100 Sobic006G031800 Sobic006G031800 Sobic004G294700--Sobic006G031800 Sobic006G271800 Sobic006G271800 Sobic004G294700--Sobic006G271800 Sobic006G181000 Sobic006G181000 Sobic004G294700--Sobic006G181000 Sobic007G136800 Sobic007G136800 Sobic004G294700--Sobic007G136800 Sobic001G043800 Sobic001G043800 Sobic004G294700--Sobic001G043800 Sobic006G038500 Sobic006G038500 Sobic001G465700--Sobic006G038500 Sobic010G043800 Sobic010G043800 Sobic001G465700--Sobic010G043800 Sobic005G111550 Sobic005G111550 Sobic001G465700--Sobic005G111550 Sobic003G442700 Sobic003G442700 Sobic001G465700--Sobic003G442700 Sobic008G001900 Sobic008G001900 Sobic001G465700--Sobic008G001900 Sobic001G465700--Sobic004G294700 Sobic001G530900 Sobic001G530900 Sobic001G465700--Sobic001G530900 Sobic004G298900 Sobic004G298900 Sobic001G465700--Sobic004G298900 Sobic001G465700--Sobic006G031800 Sobic002G145000--Sobic004G294700 Sobic002G145000--Sobic006G181000 Sobic002G145000--Sobic004G182900 Sobic002G145000--Sobic001G043800 Sobic004G086700 Sobic004G086700 Sobic002G145000--Sobic004G086700 Sobic007G159000 Sobic007G159000 Sobic002G145000--Sobic007G159000 Sobic003G443500 Sobic003G443500 Sobic002G145000--Sobic003G443500 Sobic002G145000--Sobic001G465700 Sobic006G260800 Sobic006G260800 Sobic002G145000--Sobic006G260800 Sobic004G182900--Sobic004G294700 Sobic009G191100 Sobic009G191100 Sobic004G182900--Sobic009G191100 Sobic004G182900--Sobic007G136800 Sobic004G178100 Sobic004G178100 Sobic004G182900--Sobic004G178100 Sobic004G182900--Sobic006G031800 Sobic004G183000 Sobic004G183000 Sobic004G182900--Sobic004G183000 Sobic002G358500 Sobic002G358500 Sobic004G182900--Sobic002G358500 Sobic010G016900 Sobic010G016900 Sobic004G182900--Sobic010G016900 Sobic004G182900--Sobic010G043800 Sobic010G126000 Sobic010G126000 Sobic003G168100--Sobic010G126000 Sobic005G167700 Sobic005G167700 Sobic003G168100--Sobic005G167700 Sobic009G129100 Sobic009G129100 Sobic003G168100--Sobic009G129100 Sobic008G044100 Sobic008G044100 Sobic003G168100--Sobic008G044100 Sobic001G433800 Sobic001G433800 Sobic003G168100--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic003G168100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic003G168100--Sobic004G244900 Sobic004G134200 Sobic004G134200 Sobic003G168100--Sobic004G134200 Sobic004G185800 Sobic004G185800 Sobic003G168100--Sobic004G185800 Sobic009G215500 Sobic009G215500 Sobic006G031800--Sobic009G215500 Sobic006G031800--Sobic001G465700 Sobic006G031800--Sobic007G136800 Sobic006G031800--Sobic003G168100 Sobic003G217700 Sobic003G217700 Sobic006G031800--Sobic003G217700 Sobic003G110800 Sobic003G110800 Sobic006G031800--Sobic003G110800 Sobic006G128300 Sobic006G128300 Sobic006G031800--Sobic006G128300 Sobic006G031800--Sobic006G038500 Sobic002G218500 Sobic002G218500 Sobic006G031800--Sobic002G218500 Sobic006G271800--Sobic001G465700 Sobic002G042500 Sobic002G042500 Sobic006G271800--Sobic002G042500 Sobic006G271800--Sobic006G031800 Sobic006G271800--Sobic006G038500 Sobic006G271800--Sobic004G294700 Sobic006G271800--Sobic006G128300 Sobic002G431300 Sobic002G431300 Sobic006G271800--Sobic002G431300 Sobic006G271800--Sobic007G136800 Sobic006G271800--Sobic001G043800 Sobic006G181000--Sobic004G294700 Sobic002G296100 Sobic002G296100 Sobic006G181000--Sobic002G296100 Sobic006G181000--Sobic002G145000 Sobic007G029700 Sobic007G029700 Sobic006G181000--Sobic007G029700 Sobic006G181000--Sobic004G182900 Sobic006G181000--Sobic002G218500 Sobic001G037500 Sobic001G037500 Sobic006G181000--Sobic001G037500 Sobic006G181000--Sobic010G016900 Sobic006G181000--Sobic008G001900 Sobic007G136800--Sobic003G398700 Sobic007G136800--Sobic010G126000 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic001G043800--Sobic007G136800 Sobic006G130800 Sobic006G130800 Sobic001G043800--Sobic006G130800 Sobic001G043800--Sobic004G086700 Sobic001G043800--Sobic002G218500 Sobic001G102500 Sobic001G102500 Sobic001G043800--Sobic001G102500 Sobic001G043800--Sobic006G031800 Sobic001G043800--Sobic007G029700 Sobic001G053000 Sobic001G053000 Sobic001G043800--Sobic001G053000 Sobic001G043800--Sobic002G431300
Octagon: transcription factors


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