Gene annotation
Transcriptome id Sobic.004G268100.1
Synonym OTC, Sb04g030600
Functional annotation ornithine carbamoyltransferase, putative, expressed
UniProt C5Y0C0
Pfam PF00185 PF02729
Panther DB PTHR11405:SF1 PTHR11405
NCBI CDD KOG1504; Ornithine carbamoyltransferase OTC/ARG3
KEGG Orthology K00611; OTC, argF, ornithine carbamoyltransferase
Gene Ontology GO:0016597; amino acid binding GO:0006520cellular amino acid metabolic process GO:0016743carboxyl- or carbamoyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G75330 : ornithine carbamoyltransferase
RAP-DB (Rice) LOC_Os02g47590.1 : ornithine carbamoyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a021713 , Zm00025a032437
Brachypodium KQK00933 , KQK00932
Barley HORVU6Hr1G068750.6 , HORVU6Hr1G068750.4 , HORVU6Hr1G068750.5 , HORVU6Hr1G068750.2 , HORVU6Hr1G068750.3 , HORVU6Hr1G068750.1
Wheat TraesCS6A02G272200 , TraesCS6D02G252300 , TraesCS6D02G252300 , TraesCS6B02G299700 , TraesCS6B02G299700
Populus -


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cDNA sequences
Sobic.004G268100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
2 Sobic.002G332400 PPR repeat domain containing protein, putative, expressed -
3 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
4 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
5 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
6 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
7 Sobic.006G170200 amino acid kinase, putative, expressed K00930: acetylglutamate kinase
8 Sobic.004G214400 tic20, putative, expressed -
9 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
10 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
11 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
12 Sobic.001G120500 toc64, putative, expressed -
13 Sobic.003G298400 expressed protein -
14 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
15 Sobic.001G249400 tetrapyrrole methylase family protein, putative, expressed K07056: 16S rRNA (cytidine1402-2'-O)-methyltransferase
16 Sobic.003G345900 histone deacetylase, putative, expressed -
17 Sobic.001G380500 appr-1-p processing enzyme family protein, putative, expressed -
18 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
19 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
20 Sobic.006G088000 translocon Tic40, putative, expressed -


Gene co-expression network
sample Sobic004G268100 Sobic004G268100 Sobic009G029700 Sobic009G029700 Sobic004G268100--Sobic009G029700 Sobic002G332400 Sobic002G332400 Sobic004G268100--Sobic002G332400 Sobic009G124000 Sobic009G124000 Sobic004G268100--Sobic009G124000 Sobic002G238000 Sobic002G238000 Sobic004G268100--Sobic002G238000 Sobic001G437200 Sobic001G437200 Sobic004G268100--Sobic001G437200 Sobic003G310100 Sobic003G310100 Sobic004G268100--Sobic003G310100 Sobic006G170200 Sobic006G170200 Sobic004G268100--Sobic006G170200 Sobic004G214400 Sobic004G214400 Sobic004G268100--Sobic004G214400 Sobic001G375000 Sobic001G375000 Sobic004G268100--Sobic001G375000 Sobic001G380500 Sobic001G380500 Sobic009G029700--Sobic001G380500 Sobic009G029700--Sobic004G268100 Sobic007G029100 Sobic007G029100 Sobic009G029700--Sobic007G029100 Sobic004G117800 Sobic004G117800 Sobic009G029700--Sobic004G117800 Sobic009G029700--Sobic001G437200 Sobic002G039000 Sobic002G039000 Sobic009G029700--Sobic002G039000 Sobic009G029700--Sobic003G310100 Sobic002G281800 Sobic002G281800 Sobic009G029700--Sobic002G281800 Sobic001G202500 Sobic001G202500 Sobic009G029700--Sobic001G202500 Sobic002G332400--Sobic004G268100 Sobic009G243100 Sobic009G243100 Sobic002G332400--Sobic009G243100 Sobic001G244300 Sobic001G244300 Sobic002G332400--Sobic001G244300 Sobic002G109600 Sobic002G109600 Sobic002G332400--Sobic002G109600 Sobic002G332400--Sobic009G029700 Sobic002G332400--Sobic001G202500 Sobic010G228700 Sobic010G228700 Sobic002G332400--Sobic010G228700 Sobic005G172500 Sobic005G172500 Sobic002G332400--Sobic005G172500 Sobic001G120500 Sobic001G120500 Sobic002G332400--Sobic001G120500 Sobic001G486700 Sobic001G486700 Sobic009G124000--Sobic001G486700 Sobic008G183700 Sobic008G183700 Sobic009G124000--Sobic008G183700 Sobic001G376700 Sobic001G376700 Sobic009G124000--Sobic001G376700 Sobic004G275600 Sobic004G275600 Sobic009G124000--Sobic004G275600 Sobic001G401700 Sobic001G401700 Sobic009G124000--Sobic001G401700 Sobic007G208300 Sobic007G208300 Sobic009G124000--Sobic007G208300 Sobic003G292300 Sobic003G292300 Sobic009G124000--Sobic003G292300 Sobic002G244500 Sobic002G244500 Sobic009G124000--Sobic002G244500 Sobic010G221600 Sobic010G221600 Sobic009G124000--Sobic010G221600 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic008G165900 Sobic008G165900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic006G125900 Sobic006G125900 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic002G238000--Sobic010G228700 Sobic001G224200 Sobic001G224200 Sobic002G238000--Sobic001G224200 Sobic002G092050 Sobic002G092050 Sobic002G238000--Sobic002G092050 Sobic002G238000--Sobic004G268100 Sobic003G298400 Sobic003G298400 Sobic001G437200--Sobic003G298400 Sobic006G237100 Sobic006G237100 Sobic001G437200--Sobic006G237100 Sobic001G437200--Sobic003G310100 Sobic002G404900 Sobic002G404900 Sobic001G437200--Sobic002G404900 Sobic009G131600 Sobic009G131600 Sobic001G437200--Sobic009G131600 Sobic001G424300 Sobic001G424300 Sobic001G437200--Sobic001G424300 Sobic001G445200 Sobic001G445200 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G161400 Sobic001G161400 Sobic001G437200--Sobic001G161400 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic003G310100--Sobic001G437200 Sobic001G281500 Sobic001G281500 Sobic003G310100--Sobic001G281500 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600 Sobic001G416300 Sobic001G416300 Sobic006G170200--Sobic001G416300 Sobic006G170200--Sobic004G117800 Sobic006G170200--Sobic004G268100 Sobic003G402200 Sobic003G402200 Sobic006G170200--Sobic003G402200 Sobic006G170200--Sobic009G029700 Sobic006G170200--Sobic001G202500 Sobic006G170200--Sobic002G281800 Sobic009G000900 Sobic009G000900 Sobic006G170200--Sobic009G000900 Sobic009G152400 Sobic009G152400 Sobic006G170200--Sobic009G152400 Sobic004G214400--Sobic001G375000 Sobic004G263200 Sobic004G263200 Sobic004G214400--Sobic004G263200 Sobic006G281066 Sobic006G281066 Sobic004G214400--Sobic006G281066 Sobic007G101300 Sobic007G101300 Sobic004G214400--Sobic007G101300 Sobic006G088000 Sobic006G088000 Sobic004G214400--Sobic006G088000 Sobic001G433100 Sobic001G433100 Sobic004G214400--Sobic001G433100 Sobic010G027200 Sobic010G027200 Sobic004G214400--Sobic010G027200 Sobic004G214400--Sobic006G237100 Sobic004G003900 Sobic004G003900 Sobic004G214400--Sobic004G003900 Sobic003G128400 Sobic003G128400 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100
Octagon: transcription factors


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