Gene annotation
Transcriptome id Sobic.004G220300.1
Synonym PAL2, ATPAL2, Sb04g026510, PAL;PAL
Functional annotation "Phenylalanine ammonia-lyase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
phenylalanine ammonia-lyase, putative, expressed
UniProt C5XXT8
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF11
NCBI CDD -
KEGG Orthology K13064; phenylalanine/tyrosine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53260 : phenylalanine ammonia-lyase 2
RAP-DB (Rice) LOC_Os02g41630.2 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021097 , Zm00025a021100 , Zm00025a021102 , Zm00025a021099 , Zm00025a032035 , Zm00025a032034 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQK00065 , KQK00064 , KQK00414 , KQK00415
Barley HORVU2Hr1G038140.4 , HORVU2Hr1G038140.5 , HORVU2Hr1G038140.2 , HORVU2Hr1G038140.3 , HORVU2Hr1G038140.1 , HORVU2Hr1G089440.17 , HORVU2Hr1G089440.16 , HORVU2Hr1G089440.15 , HORVU6Hr1G058820.7 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.3 , HORVU6Hr1G058820.2 , HORVU6Hr1G058820.1 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU0Hr1G016330.7 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.5 , HORVU0Hr1G016330.4 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU2Hr1G089540.1 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU2Hr1G038120.4 , HORVU2Hr1G038120.5 , HORVU2Hr1G038120.6 , HORVU2Hr1G038120.1 , HORVU2Hr1G038120.2 , HORVU2Hr1G038120.3 , HORVU0Hr1G016330.10 , HORVU2Hr1G089440.6 , HORVU2Hr1G089440.5 , HORVU2Hr1G089440.4 , HORVU2Hr1G089440.2 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.11 , HORVU6Hr1G058820.10
Wheat TraesCS1D02G039300 , TraesCS2B02G020100 , TraesCS3B02G053900 , TraesCS6A02G222900 , TraesCS3D02G016500 , TraesCS2B02G398200 , TraesCS5B02G468300 , TraesCS2D02G377600 , TraesCS2A02G381100 , TraesCS1B02G048400 , TraesCS1B02G048400 , TraesCS2B02G398400 , TraesCS2A02G380900 , TraesCS3A02G029200 , TraesCS1B02G048200 , TraesCS2D02G377400 , TraesCS6D02G212200 , TraesCS6D02G212200 , TraesCS1A02G037700 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS3D02G016300 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6A02G222800 , TraesCS2D02G377500
Populus -


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cDNA sequences
Sobic.004G220300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G213100 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
2 Sobic.006G245300 expressed protein -
3 Sobic.003G328800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
4 Sobic.003G397300 - -
5 Sobic.009G162500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase
6 Sobic.001G516500 expansin precursor, putative, expressed -
7 Sobic.009G026200 IQ calmodulin-binding motif domain containing protein, expressed -
8 Sobic.001G471900 C2 domain containing protein, putative, expressed -
9 Sobic.008G174800 DNA binding protein, putative, expressed -
10 Sobic.001G194000 DEFL6 - Defensin and Defensin-like DEFL family, expressed -
11 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
12 Sobic.006G279900 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
13 Sobic.006G194150 - -
14 Sobic.003G380500 expressed protein -
15 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
16 Sobic.006G262600 expressed protein -
17 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
18 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
19 Sobic.006G133600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
20 Sobic.001G479800 glycosyl transferase, putative, expressed -


Gene co-expression network
sample Sobic004G220300 Sobic004G220300 Sobic006G213100 Sobic006G213100 Sobic004G220300--Sobic006G213100 Sobic006G245300 Sobic006G245300 Sobic004G220300--Sobic006G245300 Sobic003G328800 Sobic003G328800 Sobic004G220300--Sobic003G328800 Sobic003G397300 Sobic003G397300 Sobic004G220300--Sobic003G397300 Sobic009G162500 Sobic009G162500 Sobic004G220300--Sobic009G162500 Sobic001G516500 Sobic001G516500 Sobic004G220300--Sobic001G516500 Sobic009G026200 Sobic009G026200 Sobic004G220300--Sobic009G026200 Sobic001G471900 Sobic001G471900 Sobic004G220300--Sobic001G471900 Sobic008G174800 Sobic008G174800 Sobic004G220300--Sobic008G174800 Sobic006G133600 Sobic006G133600 Sobic006G213100--Sobic006G133600 Sobic009G214600 Sobic009G214600 Sobic006G213100--Sobic009G214600 Sobic006G213100--Sobic003G397300 Sobic006G213100--Sobic003G328800 Sobic007G191100 Sobic007G191100 Sobic006G213100--Sobic007G191100 Sobic001G056300 Sobic001G056300 Sobic006G213100--Sobic001G056300 Sobic003G044900 Sobic003G044900 Sobic006G213100--Sobic003G044900 Sobic006G213100--Sobic004G220300 Sobic007G099500 Sobic007G099500 Sobic006G213100--Sobic007G099500 Sobic006G046500 Sobic006G046500 Sobic006G245300--Sobic006G046500 Sobic006G245300--Sobic004G220300 Sobic009G175200 Sobic009G175200 Sobic006G245300--Sobic009G175200 Sobic003G020300 Sobic003G020300 Sobic006G245300--Sobic003G020300 Sobic003G375000 Sobic003G375000 Sobic006G245300--Sobic003G375000 Sobic006G139300 Sobic006G139300 Sobic006G245300--Sobic006G139300 Sobic008G086200 Sobic008G086200 Sobic006G245300--Sobic008G086200 Sobic005G088500 Sobic005G088500 Sobic006G245300--Sobic005G088500 Sobic003G183800 Sobic003G183800 Sobic006G245300--Sobic003G183800 Sobic003G328800--Sobic006G213100 Sobic005G012000 Sobic005G012000 Sobic003G328800--Sobic005G012000 Sobic004G164650 Sobic004G164650 Sobic003G328800--Sobic004G164650 Sobic003G328800--Sobic003G397300 Sobic008G126200 Sobic008G126200 Sobic003G328800--Sobic008G126200 Sobic003G380500 Sobic003G380500 Sobic003G328800--Sobic003G380500 Sobic001G082300 Sobic001G082300 Sobic003G328800--Sobic001G082300 Sobic008G136000 Sobic008G136000 Sobic003G328800--Sobic008G136000 Sobic003G328800--Sobic003G044900 Sobic003G397300--Sobic006G213100 Sobic006G194150 Sobic006G194150 Sobic003G397300--Sobic006G194150 Sobic003G397300--Sobic003G328800 Sobic003G397300--Sobic009G214600 Sobic002G279100 Sobic002G279100 Sobic003G397300--Sobic002G279100 Sobic007G189800 Sobic007G189800 Sobic003G397300--Sobic007G189800 Sobic009G064766 Sobic009G064766 Sobic003G397300--Sobic009G064766 Sobic001G194000 Sobic001G194000 Sobic003G397300--Sobic001G194000 Sobic005G085600 Sobic005G085600 Sobic003G397300--Sobic005G085600 Sobic003G296400 Sobic003G296400 Sobic009G162500--Sobic003G296400 Sobic002G205500 Sobic002G205500 Sobic009G162500--Sobic002G205500 Sobic003G062000 Sobic003G062000 Sobic009G162500--Sobic003G062000 Sobic003G151300 Sobic003G151300 Sobic009G162500--Sobic003G151300 Sobic002G003200 Sobic002G003200 Sobic009G162500--Sobic002G003200 Sobic003G366300 Sobic003G366300 Sobic009G162500--Sobic003G366300 Sobic001G535400 Sobic001G535400 Sobic009G162500--Sobic001G535400 Sobic009G153800 Sobic009G153800 Sobic009G162500--Sobic009G153800 Sobic009G032600 Sobic009G032600 Sobic009G162500--Sobic009G032600 Sobic003G034500 Sobic003G034500 Sobic001G516500--Sobic003G034500 Sobic008G106800 Sobic008G106800 Sobic001G516500--Sobic008G106800 Sobic001G516500--Sobic001G471900 Sobic001G230700 Sobic001G230700 Sobic001G516500--Sobic001G230700 Sobic009G065000 Sobic009G065000 Sobic001G516500--Sobic009G065000 Sobic004G164500 Sobic004G164500 Sobic001G516500--Sobic004G164500 Sobic006G241300 Sobic006G241300 Sobic001G516500--Sobic006G241300 Sobic001G516500--Sobic006G194150 Sobic001G028800 Sobic001G028800 Sobic001G516500--Sobic001G028800 Sobic009G026200--Sobic003G151300 Sobic004G134100 Sobic004G134100 Sobic009G026200--Sobic004G134100 Sobic001G069800 Sobic001G069800 Sobic009G026200--Sobic001G069800 Sobic009G026200--Sobic008G174800 Sobic010G224900 Sobic010G224900 Sobic009G026200--Sobic010G224900 Sobic008G008400 Sobic008G008400 Sobic009G026200--Sobic008G008400 Sobic004G051300 Sobic004G051300 Sobic009G026200--Sobic004G051300 Sobic004G006700 Sobic004G006700 Sobic009G026200--Sobic004G006700 Sobic001G230900 Sobic001G230900 Sobic009G026200--Sobic001G230900 Sobic001G056700 Sobic001G056700 Sobic001G471900--Sobic001G056700 Sobic001G471900--Sobic004G164500 Sobic001G471900--Sobic008G106800 Sobic010G228600 Sobic010G228600 Sobic001G471900--Sobic010G228600 Sobic010G154150 Sobic010G154150 Sobic001G471900--Sobic010G154150 Sobic002G291300 Sobic002G291300 Sobic001G471900--Sobic002G291300 Sobic006G257900 Sobic006G257900 Sobic001G471900--Sobic006G257900 Sobic010G144400 Sobic010G144400 Sobic001G471900--Sobic010G144400 Sobic003G273100 Sobic003G273100 Sobic001G471900--Sobic003G273100 Sobic008G174800--Sobic003G151300 Sobic008G174800--Sobic009G026200 Sobic003G198500 Sobic003G198500 Sobic008G174800--Sobic003G198500 Sobic004G247300 Sobic004G247300 Sobic008G174800--Sobic004G247300 Sobic009G079100 Sobic009G079100 Sobic008G174800--Sobic009G079100 Sobic008G174800--Sobic004G051300 Sobic008G174800--Sobic008G008400 Sobic010G060600 Sobic010G060600 Sobic008G174800--Sobic010G060600 Sobic008G174800--Sobic004G134100
Octagon: transcription factors


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