Gene annotation
Transcriptome id Sobic.004G167800.3
Synonym Sb04g021920
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
pectinesterase inhibitor domain containing protein, putative, expressed
UniProt C5XU05
Pfam PF04043
Panther DB PTHR35357 PTHR35357:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004857; enzyme inhibitor activity


Orthologs (automatic annotation)
TAIR AT5G46930 : Plant invertase/pectin methylesterase inhibitor superfamily protein
RAP-DB (Rice) LOC_Os02g33380.1 : pectinesterase inhibitor domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020574
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
3 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
4 Sobic.009G234100 WRKY49, expressed -
5 Sobic.002G423300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
7 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
9 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
10 Sobic.003G129000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.002G190900 expressed protein -
12 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
13 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.004G307000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
15 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.010G176600 - -
17 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
18 Sobic.001G400700 pathogenesis-related Bet v I family protein, putative, expressed -
19 Sobic.006G106800 - -
20 Sobic.010G009300 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase


Gene co-expression network
sample Sobic004G167800 Sobic004G167800 Sobic009G177800 Sobic009G177800 Sobic004G167800--Sobic009G177800 Sobic002G183200 Sobic002G183200 Sobic004G167800--Sobic002G183200 Sobic004G166700 Sobic004G166700 Sobic004G167800--Sobic004G166700 Sobic009G234100 Sobic009G234100 Sobic004G167800--Sobic009G234100 Sobic002G423300 Sobic002G423300 Sobic004G167800--Sobic002G423300 Sobic001G252300 Sobic001G252300 Sobic004G167800--Sobic001G252300 Sobic001G119000 Sobic001G119000 Sobic004G167800--Sobic001G119000 Sobic004G208700 Sobic004G208700 Sobic004G167800--Sobic004G208700 Sobic005G091500 Sobic005G091500 Sobic004G167800--Sobic005G091500 Sobic009G177800--Sobic002G183200 Sobic004G307000 Sobic004G307000 Sobic009G177800--Sobic004G307000 Sobic008G111100 Sobic008G111100 Sobic009G177800--Sobic008G111100 Sobic001G119100 Sobic001G119100 Sobic009G177800--Sobic001G119100 Sobic002G195900 Sobic002G195900 Sobic009G177800--Sobic002G195900 Sobic009G177800--Sobic001G119000 Sobic006G173900 Sobic006G173900 Sobic009G177800--Sobic006G173900 Sobic009G177800--Sobic004G167800 Sobic007G171000 Sobic007G171000 Sobic009G177800--Sobic007G171000 Sobic003G286600 Sobic003G286600 Sobic002G183200--Sobic003G286600 Sobic002G183200--Sobic005G091500 Sobic004G189400 Sobic004G189400 Sobic002G183200--Sobic004G189400 Sobic001G025300 Sobic001G025300 Sobic002G183200--Sobic001G025300 Sobic002G183200--Sobic001G119100 Sobic010G176600 Sobic010G176600 Sobic002G183200--Sobic010G176600 Sobic006G099900 Sobic006G099900 Sobic002G183200--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic002G183200--Sobic001G317200 Sobic010G084400 Sobic010G084400 Sobic002G183200--Sobic010G084400 Sobic004G166700--Sobic001G252300 Sobic009G229000 Sobic009G229000 Sobic004G166700--Sobic009G229000 Sobic002G416600 Sobic002G416600 Sobic004G166700--Sobic002G416600 Sobic004G166700--Sobic009G234100 Sobic005G051200 Sobic005G051200 Sobic004G166700--Sobic005G051200 Sobic004G166700--Sobic004G208700 Sobic006G092500 Sobic006G092500 Sobic004G166700--Sobic006G092500 Sobic003G345100 Sobic003G345100 Sobic004G166700--Sobic003G345100 Sobic005G063100 Sobic005G063100 Sobic004G166700--Sobic005G063100 Sobic009G234100--Sobic004G208700 Sobic009G234100--Sobic005G063100 Sobic009G234100--Sobic003G345100 Sobic009G234100--Sobic003G286600 Sobic001G435000 Sobic001G435000 Sobic009G234100--Sobic001G435000 Sobic008G050600 Sobic008G050600 Sobic009G234100--Sobic008G050600 Sobic005G099000 Sobic005G099000 Sobic009G234100--Sobic005G099000 Sobic007G155000 Sobic007G155000 Sobic009G234100--Sobic007G155000 Sobic010G259600 Sobic010G259600 Sobic009G234100--Sobic010G259600 Sobic003G334600 Sobic003G334600 Sobic002G423300--Sobic003G334600 Sobic003G369100 Sobic003G369100 Sobic002G423300--Sobic003G369100 Sobic008G136400 Sobic008G136400 Sobic002G423300--Sobic008G136400 Sobic002G055600 Sobic002G055600 Sobic002G423300--Sobic002G055600 Sobic002G423300--Sobic009G234100 Sobic002G333400 Sobic002G333400 Sobic002G423300--Sobic002G333400 Sobic002G423300--Sobic004G208700 Sobic004G237800 Sobic004G237800 Sobic002G423300--Sobic004G237800 Sobic002G423300--Sobic003G345100 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic001G252300--Sobic004G166700 Sobic001G252300--Sobic005G051200 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic003G297600 Sobic003G297600 Sobic001G252300--Sobic003G297600 Sobic001G252300--Sobic002G416600 Sobic001G252300--Sobic008G050600 Sobic001G252300--Sobic003G286600 Sobic001G119000--Sobic001G119100 Sobic001G119000--Sobic005G091500 Sobic001G119000--Sobic002G183200 Sobic002G245100 Sobic002G245100 Sobic001G119000--Sobic002G245100 Sobic001G119000--Sobic001G252300 Sobic001G119000--Sobic002G055600 Sobic001G119000--Sobic004G189400 Sobic001G119000--Sobic004G166700 Sobic001G389000 Sobic001G389000 Sobic001G119000--Sobic001G389000 Sobic004G208700--Sobic009G234100 Sobic004G208700--Sobic001G435000 Sobic004G208700--Sobic003G345100 Sobic004G208700--Sobic003G286600 Sobic004G208700--Sobic008G050600 Sobic009G164600 Sobic009G164600 Sobic004G208700--Sobic009G164600 Sobic009G159400 Sobic009G159400 Sobic004G208700--Sobic009G159400 Sobic004G208700--Sobic005G063100 Sobic004G208700--Sobic007G155000 Sobic005G091500--Sobic004G189400 Sobic005G091500--Sobic004G237800 Sobic005G091500--Sobic005G063100 Sobic005G091500--Sobic008G050600 Sobic002G055700 Sobic002G055700 Sobic005G091500--Sobic002G055700 Sobic005G091500--Sobic006G099900 Sobic003G382600 Sobic003G382600 Sobic005G091500--Sobic003G382600 Sobic005G091500--Sobic009G159400 Sobic005G091500--Sobic003G286600
Octagon: transcription factors


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