Gene annotation
Transcriptome id Sobic.002G055600.1
Synonym ATCHIA, CHIA, Sb02g004650
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
glycosyl hydrolase, putative, expressed
UniProt C5XB38
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF171
NCBI CDD -
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G24090 : chitinase A
RAP-DB (Rice) LOC_Os06g25010.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a045187
Brachypodium KQJ87107 , KQJ87108
Barley HORVU2Hr1G043900.1 , HORVU2Hr1G043900.2 , HORVU2Hr1G043900.3
Wheat TraesCS6B02G103900 , TraesCS4D02G142000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
2 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
3 Sobic.008G136400 expressed protein -
4 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
5 Sobic.004G189400 expressed protein -
6 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
8 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
9 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
12 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
14 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
15 Sobic.006G121500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
17 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
18 Sobic.002G263400 expressed protein -
19 Sobic.002G423300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II


Gene co-expression network
sample Sobic002G055600 Sobic002G055600 Sobic004G237800 Sobic004G237800 Sobic002G055600--Sobic004G237800 Sobic005G091500 Sobic005G091500 Sobic002G055600--Sobic005G091500 Sobic008G136400 Sobic008G136400 Sobic002G055600--Sobic008G136400 Sobic004G321300 Sobic004G321300 Sobic002G055600--Sobic004G321300 Sobic004G189400 Sobic004G189400 Sobic002G055600--Sobic004G189400 Sobic002G055700 Sobic002G055700 Sobic002G055600--Sobic002G055700 Sobic003G334600 Sobic003G334600 Sobic002G055600--Sobic003G334600 Sobic002G183200 Sobic002G183200 Sobic002G055600--Sobic002G183200 Sobic004G189500 Sobic004G189500 Sobic002G055600--Sobic004G189500 Sobic007G074000 Sobic007G074000 Sobic004G237800--Sobic007G074000 Sobic004G237800--Sobic004G321300 Sobic002G336600 Sobic002G336600 Sobic004G237800--Sobic002G336600 Sobic004G237800--Sobic004G189400 Sobic004G237800--Sobic002G055700 Sobic002G140400 Sobic002G140400 Sobic004G237800--Sobic002G140400 Sobic004G237800--Sobic005G091500 Sobic001G112200 Sobic001G112200 Sobic004G237800--Sobic001G112200 Sobic005G063100 Sobic005G063100 Sobic004G237800--Sobic005G063100 Sobic005G091500--Sobic004G189400 Sobic005G091500--Sobic004G237800 Sobic005G091500--Sobic005G063100 Sobic008G050600 Sobic008G050600 Sobic005G091500--Sobic008G050600 Sobic005G091500--Sobic002G055700 Sobic006G099900 Sobic006G099900 Sobic005G091500--Sobic006G099900 Sobic003G382600 Sobic003G382600 Sobic005G091500--Sobic003G382600 Sobic009G159400 Sobic009G159400 Sobic005G091500--Sobic009G159400 Sobic003G286600 Sobic003G286600 Sobic005G091500--Sobic003G286600 Sobic001G038900 Sobic001G038900 Sobic008G136400--Sobic001G038900 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic006G275200 Sobic006G275200 Sobic008G136400--Sobic006G275200 Sobic001G140900 Sobic001G140900 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic008G136400--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic008G136400--Sobic009G008900 Sobic004G321300--Sobic004G237800 Sobic004G321300--Sobic009G159400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic004G321300--Sobic001G038900 Sobic004G321300--Sobic002G055700 Sobic004G321300--Sobic001G140900 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic004G189400--Sobic002G140400 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G189400--Sobic004G237800 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200 Sobic003G303100 Sobic003G303100 Sobic002G055700--Sobic003G303100 Sobic002G055700--Sobic003G382600 Sobic002G055700--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic002G055700--Sobic003G426400 Sobic002G353900 Sobic002G353900 Sobic002G055700--Sobic002G353900 Sobic004G148200 Sobic004G148200 Sobic002G055700--Sobic004G148200 Sobic002G055700--Sobic004G189400 Sobic002G338500 Sobic002G338500 Sobic002G055700--Sobic002G338500 Sobic001G367600 Sobic001G367600 Sobic002G055700--Sobic001G367600 Sobic003G369100 Sobic003G369100 Sobic003G334600--Sobic003G369100 Sobic003G334600--Sobic001G038900 Sobic003G334600--Sobic008G136400 Sobic003G334600--Sobic002G140400 Sobic003G334600--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G334600--Sobic001G308300 Sobic003G334600--Sobic007G074000 Sobic003G387000 Sobic003G387000 Sobic003G334600--Sobic003G387000 Sobic003G334600--Sobic003G345100 Sobic002G183200--Sobic003G286600 Sobic002G183200--Sobic005G091500 Sobic002G183200--Sobic004G189400 Sobic001G025300 Sobic001G025300 Sobic002G183200--Sobic001G025300 Sobic001G119100 Sobic001G119100 Sobic002G183200--Sobic001G119100 Sobic010G176600 Sobic010G176600 Sobic002G183200--Sobic010G176600 Sobic002G183200--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic002G183200--Sobic001G317200 Sobic010G084400 Sobic010G084400 Sobic002G183200--Sobic010G084400 Sobic004G189500--Sobic004G148200 Sobic004G189500--Sobic002G055700 Sobic004G189500--Sobic004G189400 Sobic004G189500--Sobic005G091500 Sobic006G039100 Sobic006G039100 Sobic004G189500--Sobic006G039100 Sobic003G297600 Sobic003G297600 Sobic004G189500--Sobic003G297600 Sobic004G189500--Sobic005G029200 Sobic009G231000 Sobic009G231000 Sobic004G189500--Sobic009G231000 Sobic010G213700 Sobic010G213700 Sobic004G189500--Sobic010G213700
Octagon: transcription factors


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