Gene annotation
| Transcriptome id | Sobic.004G036100.3,Sobic.004G036100.2,Sobic.004G036100.1 |
|---|---|
| Synonym | NAMT1 |
| Functional annotation | SAM dependent carboxyl methyltransferase, putative, expressed |
| UniProt | A0A194YMJ5 , A0A194YMI2 , A0A194YMK9 |
| Pfam | PF03492 |
| Panther DB | PTHR31009 PTHR31009:SF16 PTHR31009:SF16 PTHR31009 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008168; methyltransferase activity |
Orthologs (automatic annotation)
| TAIR | AT5G04370 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g13310.1 : SAM dependent carboxyl methyltransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a018936 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G255600 | thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed | - |
| 2 | Sobic.003G120500 | transmembrane protein 136, putative, expressed | - |
| 3 | Sobic.003G157400 | TPR repeat, putative, expressed | - |
| 4 | Sobic.001G464700 | - | - |
| 5 | Sobic.003G069200 | transferase family protein, putative, expressed | K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase |
| 6 | Sobic.007G185100 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 7 | Sobic.004G054500 | porphobilinogen deaminase, chloroplast precursor, putative, expressed | K01749: hemC, hydroxymethylbilane synthase |
| 8 | Sobic.004G044200 | enoyl-CoA hydratase/isomerase family protein, putative, expressed | K01661: naphthoate synthase |
| 9 | Sobic.006G145500 | Beta-glucosidase 16 (Precursor)(PubMedID : 26186930)@Os4bglu16 - monolignol beta-glucoside homologue, expressed | K05350: beta-glucosidase |
| 10 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 11 | Sobic.001G475600 | prenyltransferase, putative, expressed | K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase |
| 12 | Sobic.004G019300 | terpene synthase, putative, expressed | K15086: (3S)-linalool synthase |
| 13 | Sobic.001G203000 | thylakoid lumenal protein, putative, expressed | - |
| 14 | Sobic.003G386300 | expressed protein | - |
| 15 | Sobic.004G024600 | expressed protein | - |
| 16 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 17 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 18 | Sobic.009G091850 | - | - |
| 19 | Sobic.003G383600 | - | - |
| 20 | Sobic.001G221300 | alcohol oxidase, putative, expressed | K17756: long-chain-alcohol oxidase |
Gene co-expression network
Octagon: transcription factors
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