Gene annotation
| Transcriptome id | Sobic.010G255600.1 |
|---|---|
| Synonym | Sb10g029300 |
| Functional annotation | thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed |
| UniProt | C5Z9A2 |
| Pfam | - |
| Panther DB | PTHR35742 PTHR35742:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G02530 : chloroplast thylakoid lumen protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g49160.1 : thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a018411 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.010G255600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 2 | Sobic.001G203000 | thylakoid lumenal protein, putative, expressed | - |
| 3 | Sobic.009G091850 | - | - |
| 4 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 5 | Sobic.004G036100 | SAM dependent carboxyl methyltransferase, putative, expressed | - |
| 6 | Sobic.007G185100 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 7 | Sobic.004G054500 | porphobilinogen deaminase, chloroplast precursor, putative, expressed | K01749: hemC, hydroxymethylbilane synthase |
| 8 | Sobic.003G099400 | cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed | K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| 9 | Sobic.007G116950 | - | - |
| 10 | Sobic.001G464700 | - | - |
| 11 | Sobic.004G317900 | expressed protein | - |
| 12 | Sobic.003G157400 | TPR repeat, putative, expressed | - |
| 13 | Sobic.004G114800 | expressed protein | - |
| 14 | Sobic.003G433900 | expressed protein | - |
| 15 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 16 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 17 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 18 | Sobic.004G116100 | 50S ribosomal protein L21, chloroplast precursor, putative, expressed | K02888: RP-L21, MRPL21, large subunit ribosomal protein L21 |
| 19 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 20 | Sobic.001G527000 | PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed | K02717: photosystem II oxygen-evolving enhancer protein 2 |
Gene co-expression network
Octagon: transcription factors
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