Gene annotation
Transcriptome id Sobic.003G353200.1
Synonym ATLAC2, LAC2, Sb03g039570
Functional annotation similar to Putative laccase (PubMedID : 29862293)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
Laccase 2 LAC2 (Os) (PubMedID : 27208977)
laccase precursor protein, putative, expressed
UniProt C5XPQ5
Pfam PF07731 PF07732 PF00394
Panther DB PTHR11709 PTHR11709:SF79
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT2G29130 : laccase 2
RAP-DB (Rice) LOC_Os01g62600.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a039673 , Zm00025a026896 , Zm00025a026897 , Zm00025a043896 , Zm00025a026887 , Zm00025a002044
Brachypodium KQK22351 , KQK10535 , KQK22086 , KQK05918 , PNT77675 , KQK10527 , KQK10526
Barley HORVU1Hr1G072530.2 , HORVU1Hr1G072530.3 , HORVU1Hr1G072530.1 , HORVU1Hr1G072530.6 , HORVU1Hr1G072530.7 , HORVU1Hr1G072530.4 , HORVU1Hr1G072530.5 , HORVU1Hr1G072530.8 , HORVU1Hr1G072530.9 , HORVU4Hr1G055140.1 , HORVU4Hr1G055140.2 , HORVU3Hr1G086200.8 , HORVU3Hr1G086200.5 , HORVU3Hr1G086200.4 , HORVU3Hr1G086200.7 , HORVU3Hr1G086200.6 , HORVU3Hr1G086200.1 , HORVU3Hr1G086200.3 , HORVU3Hr1G086200.2 , HORVU4Hr1G059930.4 , HORVU4Hr1G059930.5 , HORVU4Hr1G059930.6 , HORVU4Hr1G059930.7 , HORVU4Hr1G059930.1 , HORVU4Hr1G059930.2 , HORVU4Hr1G059930.3 , HORVU4Hr1G059930.8 , HORVU4Hr1G059930.9 , HORVU3Hr1G088150.2 , HORVU4Hr1G059930.12 , HORVU4Hr1G059930.13 , HORVU4Hr1G059930.10 , HORVU4Hr1G059930.11 , HORVU3Hr1G088140.1 , HORVU3Hr1G088140.2 , HORVU4Hr1G055140.5 , HORVU4Hr1G055140.4 , HORVU3Hr1G088150.1 , HORVU3Hr1G086100.9 , HORVU3Hr1G086100.2 , HORVU3Hr1G086100.3 , HORVU3Hr1G086100.1 , HORVU3Hr1G086100.6 , HORVU3Hr1G086100.7 , HORVU3Hr1G086100.4 , HORVU3Hr1G086100.5 , HORVU3Hr1G086100.8
Wheat TraesCS1D02G282600 , TraesCS1B02G293100 , TraesCS4B02G208000 , TraesCS4B02G208000 , TraesCS3A02G348000 , TraesCS3B02G393500 , TraesCS4A02G096400 , TraesCS3B02G379900 , TraesCS3D02G354200 , TraesCS3B02G392700 , TraesCS3D02G354400 , TraesCS3A02G360400 , TraesCS3D02G354900 , TraesCS3A02G361100 , TraesCS1B02G292600 , TraesCS1D02G283000 , TraesCS3A02G360600 , TraesCS1A02G283900 , TraesCS4D02G208900 , TraesCS5A02G025000 , TraesCS4D02G190900 , TraesCS4A02G114700 , TraesCS3B02G393000 , TraesCS1A02G283400 , TraesCS4B02G189500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
2 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.002G146000 "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
4 Sobic.010G031700 thaumatin, putative, expressed -
5 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
6 Sobic.003G053600 hydrolase, alpha/beta fold family protein, putative, expressed -
7 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
9 Sobic.009G162300 similar to Putative laccase-11(PubMedID : 29862293)@Laccase LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
10 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
11 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
12 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -
13 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
14 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
15 Sobic.003G319400 receptor protein kinase, putative, expressed -
16 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
17 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.006G174300 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
19 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic003G353200 Sobic003G353200 Sobic007G037600 Sobic007G037600 Sobic003G353200--Sobic007G037600 Sobic003G280000 Sobic003G280000 Sobic003G353200--Sobic003G280000 Sobic002G146000 Sobic002G146000 Sobic003G353200--Sobic002G146000 Sobic010G031700 Sobic010G031700 Sobic003G353200--Sobic010G031700 Sobic005G202300 Sobic005G202300 Sobic003G353200--Sobic005G202300 Sobic003G053600 Sobic003G053600 Sobic003G353200--Sobic003G053600 Sobic006G106900 Sobic006G106900 Sobic003G353200--Sobic006G106900 Sobic001G218400 Sobic001G218400 Sobic003G353200--Sobic001G218400 Sobic009G162300 Sobic009G162300 Sobic003G353200--Sobic009G162300 Sobic003G441800 Sobic003G441800 Sobic007G037600--Sobic003G441800 Sobic007G037600--Sobic003G353200 Sobic007G037600--Sobic010G031700 Sobic007G037600--Sobic002G146000 Sobic003G053200 Sobic003G053200 Sobic007G037600--Sobic003G053200 Sobic004G029400 Sobic004G029400 Sobic007G037600--Sobic004G029400 Sobic001G181600 Sobic001G181600 Sobic007G037600--Sobic001G181600 Sobic001G301000 Sobic001G301000 Sobic007G037600--Sobic001G301000 Sobic006G205700 Sobic006G205700 Sobic007G037600--Sobic006G205700 Sobic003G280000--Sobic005G202300 Sobic003G280000--Sobic003G353200 Sobic003G280000--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic003G280000--Sobic003G319400 Sobic003G280000--Sobic010G031700 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic009G181600 Sobic009G181600 Sobic003G280000--Sobic009G181600 Sobic003G280000--Sobic001G218400 Sobic007G073000 Sobic007G073000 Sobic002G146000--Sobic007G073000 Sobic006G092700 Sobic006G092700 Sobic002G146000--Sobic006G092700 Sobic002G146000--Sobic007G037600 Sobic002G146000--Sobic003G353200 Sobic003G000100 Sobic003G000100 Sobic002G146000--Sobic003G000100 Sobic006G085700 Sobic006G085700 Sobic002G146000--Sobic006G085700 Sobic002G146000--Sobic010G031700 Sobic003G215300 Sobic003G215300 Sobic002G146000--Sobic003G215300 Sobic004G106100 Sobic004G106100 Sobic002G146000--Sobic004G106100 Sobic010G031700--Sobic003G053200 Sobic010G031700--Sobic007G037600 Sobic010G031700--Sobic003G441800 Sobic010G031700--Sobic004G106100 Sobic010G031700--Sobic004G029400 Sobic006G003100 Sobic006G003100 Sobic010G031700--Sobic006G003100 Sobic010G031700--Sobic006G205700 Sobic002G233200 Sobic002G233200 Sobic010G031700--Sobic002G233200 Sobic010G031700--Sobic003G353200 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic005G202300--Sobic003G053200 Sobic005G202300--Sobic010G031700 Sobic005G202300--Sobic003G353200 Sobic005G202300--Sobic004G029400 Sobic001G058300 Sobic001G058300 Sobic005G202300--Sobic001G058300 Sobic003G053600--Sobic003G353200 Sobic005G063400 Sobic005G063400 Sobic003G053600--Sobic005G063400 Sobic006G174300 Sobic006G174300 Sobic003G053600--Sobic006G174300 Sobic003G053600--Sobic010G031700 Sobic006G277700 Sobic006G277700 Sobic003G053600--Sobic006G277700 Sobic003G053600--Sobic002G146000 Sobic007G057400 Sobic007G057400 Sobic003G053600--Sobic007G057400 Sobic005G206000 Sobic005G206000 Sobic003G053600--Sobic005G206000 Sobic008G164450 Sobic008G164450 Sobic003G053600--Sobic008G164450 Sobic006G106900--Sobic003G319400 Sobic006G106900--Sobic005G202300 Sobic003G064800 Sobic003G064800 Sobic006G106900--Sobic003G064800 Sobic001G414800 Sobic001G414800 Sobic006G106900--Sobic001G414800 Sobic004G306900 Sobic004G306900 Sobic006G106900--Sobic004G306900 Sobic001G507100 Sobic001G507100 Sobic006G106900--Sobic001G507100 Sobic006G106900--Sobic009G181600 Sobic001G438200 Sobic001G438200 Sobic006G106900--Sobic001G438200 Sobic006G106900--Sobic003G280000 Sobic006G097900 Sobic006G097900 Sobic001G218400--Sobic006G097900 Sobic004G121600 Sobic004G121600 Sobic001G218400--Sobic004G121600 Sobic001G218400--Sobic001G181600 Sobic001G218400--Sobic003G441800 Sobic010G191600 Sobic010G191600 Sobic001G218400--Sobic010G191600 Sobic003G154500 Sobic003G154500 Sobic001G218400--Sobic003G154500 Sobic003G441700 Sobic003G441700 Sobic001G218400--Sobic003G441700 Sobic010G010000 Sobic010G010000 Sobic001G218400--Sobic010G010000 Sobic005G119900 Sobic005G119900 Sobic001G218400--Sobic005G119900 Sobic009G162300--Sobic003G353200 Sobic009G162300--Sobic002G146000 Sobic009G162300--Sobic003G053600 Sobic003G183300 Sobic003G183300 Sobic009G162300--Sobic003G183300 Sobic005G166700 Sobic005G166700 Sobic009G162300--Sobic005G166700 Sobic009G162300--Sobic003G280000 Sobic009G162300--Sobic006G003100 Sobic009G162300--Sobic003G257400 Sobic004G047600 Sobic004G047600 Sobic009G162300--Sobic004G047600
Octagon: transcription factors


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