Gene annotation
Transcriptome id Sobic.003G309300.1
Synonym Sb03g035760
Functional annotation radical SAM enzyme, putative, expressed
UniProt C5XKZ1
Pfam PF04055
Panther DB PTHR10949 PTHR10949:SF12
NCBI CDD -
KEGG Orthology K03644; lipA, LIAS, LIP1, lipoyl synthase
Gene Ontology GO:0003824; catalytic activity GO:0016992lipoate synthase activity GO:0009107lipoate biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G08415 : Radical SAM superfamily protein
RAP-DB (Rice) LOC_Os05g43576.1 : radical SAM enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a039931 , Zm00025a027407
Brachypodium KQK09946
Barley HORVU3Hr1G074800.4 , HORVU3Hr1G074800.5 , HORVU3Hr1G074800.2 , HORVU3Hr1G074800.3 , HORVU3Hr1G074800.1 , HORVU1Hr1G077510.3 , HORVU1Hr1G077510.2 , HORVU1Hr1G077510.1 , HORVU1Hr1G077510.7 , HORVU1Hr1G077510.6 , HORVU1Hr1G077510.4 , HORVU1Hr1G077510.8 , HORVU1Hr1G077510.12 , HORVU1Hr1G077510.11 , HORVU1Hr1G077510.10
Wheat TraesCS1D02G332600 , TraesCS3D02G304600 , TraesCS1A02G330200 , TraesCS3A02G297700 , TraesCS3B02G339000 , TraesCS3B02G339000 , TraesCS3A02G297700 , TraesCS1B02G343800
Populus -


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cDNA sequences
Sobic.003G309300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
2 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
3 Sobic.003G165101 - K12876: RBM8A, RNA-binding protein 8A
4 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
5 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
6 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
7 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
8 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
9 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
10 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
11 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
12 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase
13 Sobic.006G043700 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
14 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
15 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
16 Sobic.006G035500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
17 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
18 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin
19 Sobic.006G213400 bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
20 Sobic.007G114000 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2


Gene co-expression network
sample Sobic003G309300 Sobic003G309300 Sobic004G275600 Sobic004G275600 Sobic003G309300--Sobic004G275600 Sobic006G157000 Sobic006G157000 Sobic003G309300--Sobic006G157000 Sobic003G165101 Sobic003G165101 Sobic003G309300--Sobic003G165101 Sobic007G071900 Sobic007G071900 Sobic003G309300--Sobic007G071900 Sobic008G038600 Sobic008G038600 Sobic003G309300--Sobic008G038600 Sobic006G237000 Sobic006G237000 Sobic003G309300--Sobic006G237000 Sobic009G124000 Sobic009G124000 Sobic003G309300--Sobic009G124000 Sobic001G537500 Sobic001G537500 Sobic003G309300--Sobic001G537500 Sobic010G216300 Sobic010G216300 Sobic003G309300--Sobic010G216300 Sobic004G275600--Sobic003G309300 Sobic004G275600--Sobic003G165101 Sobic004G275600--Sobic001G537500 Sobic004G275600--Sobic009G124000 Sobic006G073200 Sobic006G073200 Sobic004G275600--Sobic006G073200 Sobic004G275600--Sobic007G071900 Sobic003G420900 Sobic003G420900 Sobic004G275600--Sobic003G420900 Sobic008G067100 Sobic008G067100 Sobic004G275600--Sobic008G067100 Sobic004G257100 Sobic004G257100 Sobic004G275600--Sobic004G257100 Sobic006G157000--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G010400 Sobic006G010400 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000 Sobic003G165101--Sobic004G275600 Sobic010G179700 Sobic010G179700 Sobic003G165101--Sobic010G179700 Sobic004G283600 Sobic004G283600 Sobic003G165101--Sobic004G283600 Sobic003G165101--Sobic006G010400 Sobic001G428800 Sobic001G428800 Sobic003G165101--Sobic001G428800 Sobic007G161200 Sobic007G161200 Sobic003G165101--Sobic007G161200 Sobic003G165101--Sobic006G237000 Sobic003G165101--Sobic003G309300 Sobic005G163700 Sobic005G163700 Sobic003G165101--Sobic005G163700 Sobic002G231500 Sobic002G231500 Sobic007G071900--Sobic002G231500 Sobic009G075800 Sobic009G075800 Sobic007G071900--Sobic009G075800 Sobic001G434200 Sobic001G434200 Sobic007G071900--Sobic001G434200 Sobic001G455800 Sobic001G455800 Sobic007G071900--Sobic001G455800 Sobic002G020700 Sobic002G020700 Sobic007G071900--Sobic002G020700 Sobic007G071900--Sobic004G257100 Sobic001G333100 Sobic001G333100 Sobic007G071900--Sobic001G333100 Sobic003G221400 Sobic003G221400 Sobic007G071900--Sobic003G221400 Sobic003G375200 Sobic003G375200 Sobic007G071900--Sobic003G375200 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic006G128400 Sobic006G128400 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic007G132200 Sobic007G132200 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic004G003900 Sobic004G003900 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic003G399100 Sobic003G399100 Sobic008G038600--Sobic003G399100 Sobic002G125800 Sobic002G125800 Sobic006G237000--Sobic002G125800 Sobic005G031000 Sobic005G031000 Sobic006G237000--Sobic005G031000 Sobic001G200200 Sobic001G200200 Sobic006G237000--Sobic001G200200 Sobic010G155600 Sobic010G155600 Sobic006G237000--Sobic010G155600 Sobic010G003900 Sobic010G003900 Sobic006G237000--Sobic010G003900 Sobic002G155100 Sobic002G155100 Sobic006G237000--Sobic002G155100 Sobic008G059900 Sobic008G059900 Sobic006G237000--Sobic008G059900 Sobic005G098800 Sobic005G098800 Sobic006G237000--Sobic005G098800 Sobic006G237000--Sobic001G537500 Sobic001G486700 Sobic001G486700 Sobic009G124000--Sobic001G486700 Sobic008G183700 Sobic008G183700 Sobic009G124000--Sobic008G183700 Sobic001G376700 Sobic001G376700 Sobic009G124000--Sobic001G376700 Sobic009G124000--Sobic004G275600 Sobic001G401700 Sobic001G401700 Sobic009G124000--Sobic001G401700 Sobic007G208300 Sobic007G208300 Sobic009G124000--Sobic007G208300 Sobic003G292300 Sobic003G292300 Sobic009G124000--Sobic003G292300 Sobic002G244500 Sobic002G244500 Sobic009G124000--Sobic002G244500 Sobic010G221600 Sobic010G221600 Sobic009G124000--Sobic010G221600 Sobic001G537500--Sobic006G073200 Sobic004G167200 Sobic004G167200 Sobic001G537500--Sobic004G167200 Sobic006G002800 Sobic006G002800 Sobic001G537500--Sobic006G002800 Sobic001G537500--Sobic004G275600 Sobic001G537500--Sobic004G257100 Sobic007G145400 Sobic007G145400 Sobic001G537500--Sobic007G145400 Sobic005G115500 Sobic005G115500 Sobic001G537500--Sobic005G115500 Sobic001G178300 Sobic001G178300 Sobic001G537500--Sobic001G178300 Sobic002G246700 Sobic002G246700 Sobic001G537500--Sobic002G246700 Sobic010G216300--Sobic006G157000 Sobic003G407600 Sobic003G407600 Sobic010G216300--Sobic003G407600 Sobic010G216300--Sobic006G010400 Sobic001G007800 Sobic001G007800 Sobic010G216300--Sobic001G007800 Sobic006G084000 Sobic006G084000 Sobic010G216300--Sobic006G084000 Sobic008G160000 Sobic008G160000 Sobic010G216300--Sobic008G160000 Sobic010G216300--Sobic003G309300 Sobic010G216300--Sobic009G071700 Sobic007G143500 Sobic007G143500 Sobic010G216300--Sobic007G143500
Octagon: transcription factors


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