Gene annotation
Transcriptome id Sobic.003G023000.1
Synonym Sb03g002180, CID9
Functional annotation CID11, putative, expressed
UniProt C5XL49
Pfam PF07145 PF00076
Panther DB PTHR24012
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) KOG0131Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G14450 : CTC-interacting domain 9
RAP-DB (Rice) LOC_Os01g11120.1 : CID11, putative, expressed
MaizeGDB (Corn) Zm00025a035884 , Zm00025a022947
Brachypodium -
Barley HORVU3Hr1G029080.4 , HORVU3Hr1G029080.5 , HORVU3Hr1G029080.6 , HORVU3Hr1G029080.7 , HORVU3Hr1G029080.1 , HORVU3Hr1G029080.2 , HORVU3Hr1G029080.3
Wheat TraesCS3A02G133700 , TraesCS3A02G133700 , TraesCS3D02G150000 , TraesCS3B02G165800
Populus -


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cDNA sequences
Sobic.003G023000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
2 Sobic.003G104700 Rer1 protein, putative, expressed -
3 Sobic.002G083266 - K00326: cytochrome-b5 reductase
4 Sobic.006G182100 ORM1, putative, expressed -
5 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
6 Sobic.002G214900 polygalacturonase, putative, expressed -
7 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
8 Sobic.010G026700 cornichon protein, putative, expressed -
9 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
10 Sobic.009G111600 expressed protein -
11 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
12 Sobic.004G284500 ORM1, putative, expressed -
13 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
14 Sobic.002G196350 - K14011: UBXN6, UBX domain-containing protein 6
15 Sobic.007G195701 - -
16 Sobic.001G415000 expressed protein -
17 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
18 Sobic.003G368500 Yip1 domain containing protein, expressed -
19 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
20 Sobic.004G269700 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K04708: 3-dehydrosphinganine reductase


Gene co-expression network
sample Sobic003G023000 Sobic003G023000 Sobic003G367451 Sobic003G367451 Sobic003G023000--Sobic003G367451 Sobic003G104700 Sobic003G104700 Sobic003G023000--Sobic003G104700 Sobic002G083266 Sobic002G083266 Sobic003G023000--Sobic002G083266 Sobic006G182100 Sobic006G182100 Sobic003G023000--Sobic006G182100 Sobic001G224400 Sobic001G224400 Sobic003G023000--Sobic001G224400 Sobic002G214900 Sobic002G214900 Sobic003G023000--Sobic002G214900 Sobic001G403700 Sobic001G403700 Sobic003G023000--Sobic001G403700 Sobic010G026700 Sobic010G026700 Sobic003G023000--Sobic010G026700 Sobic009G001400 Sobic009G001400 Sobic003G023000--Sobic009G001400 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic002G428200 Sobic002G428200 Sobic003G104700--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic003G104700--Sobic006G252200 Sobic007G076300 Sobic007G076300 Sobic003G104700--Sobic007G076300 Sobic002G078400 Sobic002G078400 Sobic003G104700--Sobic002G078400 Sobic003G104700--Sobic003G367451 Sobic007G091000 Sobic007G091000 Sobic003G104700--Sobic007G091000 Sobic003G104700--Sobic001G236300 Sobic004G224900 Sobic004G224900 Sobic003G104700--Sobic004G224900 Sobic004G335000 Sobic004G335000 Sobic003G104700--Sobic004G335000 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic002G083266--Sobic004G272800 Sobic004G284500 Sobic004G284500 Sobic006G182100--Sobic004G284500 Sobic009G033700 Sobic009G033700 Sobic006G182100--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic006G182100--Sobic002G046100 Sobic010G018400 Sobic010G018400 Sobic006G182100--Sobic010G018400 Sobic004G196300 Sobic004G196300 Sobic006G182100--Sobic004G196300 Sobic001G281400 Sobic001G281400 Sobic006G182100--Sobic001G281400 Sobic008G185400 Sobic008G185400 Sobic006G182100--Sobic008G185400 Sobic003G368500 Sobic003G368500 Sobic006G182100--Sobic003G368500 Sobic001G445800 Sobic001G445800 Sobic006G182100--Sobic001G445800 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic002G214900--Sobic007G114200 Sobic002G214900--Sobic006G182100 Sobic001G409900 Sobic001G409900 Sobic002G214900--Sobic001G409900 Sobic002G214900--Sobic003G368500 Sobic007G115100 Sobic007G115100 Sobic002G214900--Sobic007G115100 Sobic002G214900--Sobic001G403700 Sobic002G214900--Sobic001G224400 Sobic007G195701 Sobic007G195701 Sobic002G214900--Sobic007G195701 Sobic003G362400 Sobic003G362400 Sobic002G214900--Sobic003G362400 Sobic001G403700--Sobic009G111600 Sobic001G403700--Sobic004G284500 Sobic001G403700--Sobic002G078400 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic001G403700--Sobic002G214900 Sobic001G403700--Sobic010G213400 Sobic010G026700--Sobic003G104700 Sobic001G214200 Sobic001G214200 Sobic010G026700--Sobic001G214200 Sobic010G026700--Sobic002G261900 Sobic009G135600 Sobic009G135600 Sobic010G026700--Sobic009G135600 Sobic001G311100 Sobic001G311100 Sobic010G026700--Sobic001G311100 Sobic010G026700--Sobic003G023000 Sobic003G141700 Sobic003G141700 Sobic010G026700--Sobic003G141700 Sobic007G139700 Sobic007G139700 Sobic010G026700--Sobic007G139700 Sobic003G349300 Sobic003G349300 Sobic010G026700--Sobic003G349300 Sobic009G001400--Sobic007G114200 Sobic010G188100 Sobic010G188100 Sobic009G001400--Sobic010G188100 Sobic001G040800 Sobic001G040800 Sobic009G001400--Sobic001G040800 Sobic009G001400--Sobic003G367451 Sobic002G363100 Sobic002G363100 Sobic009G001400--Sobic002G363100 Sobic001G220400 Sobic001G220400 Sobic009G001400--Sobic001G220400 Sobic009G001400--Sobic006G182100 Sobic009G001400--Sobic010G018400 Sobic009G001400--Sobic003G220600
Octagon: transcription factors


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