Gene annotation
Transcriptome id Sobic.002G306600.2,Sobic.002G306600.1,Sobic.002G306600.3
Synonym COP15, Sb02g033680, CSN7, ATCSN7, FUS5
Functional annotation proteasome subunit, putative, expressed
UniProt A0A1B6QEB7 , A0A1B6QEB9 , A0A1B6QEA2
Pfam PF01399
Panther DB PTHR15350
NCBI CDD KOG3250; COP9 signalosome, subunit CSN7
KEGG Orthology K12180; COPS7, COP9 signalosome complex subunit 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G02090 : Proteasome component (PCI) domain protein
RAP-DB (Rice) LOC_Os07g30840.1,LOC_Os07g30840.3,LOC_Os07g30840.2 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a048091 , Zm00025a014690
Brachypodium PNT75060 , KQK16176 , KQK16177
Barley HORVU2Hr1G050230.9 , HORVU2Hr1G050230.8 , HORVU2Hr1G050230.2 , HORVU2Hr1G050230.3 , HORVU2Hr1G050230.1 , HORVU2Hr1G050230.6 , HORVU2Hr1G050230.7 , HORVU2Hr1G050230.4 , HORVU2Hr1G050230.5
Wheat TraesCS2B02G253600 , TraesCS2B02G253600 , TraesCS2B02G253600 , TraesCS2B02G253600 , TraesCS2D02G239100 , TraesCS2D02G239100 , TraesCS2D02G239100 , TraesCS2D02G239100 , TraesCS2A02G228300 , TraesCS2A02G228300 , TraesCS2A02G228300 , TraesCS2A02G228300
Populus -


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cDNA sequences
Sobic.002G306600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G004600 expressed protein -
2 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
3 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
4 Sobic.003G128300 NEDD8-activating enzyme E1 catalytic subunit, putative, expressed K10686: UBE1C, ubiquitin-activating enzyme E1 C
5 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
6 Sobic.003G221500 CENP-C1, putative, expressed -
7 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
8 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
9 Sobic.004G088700 expressed protein -
10 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
11 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
12 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
13 Sobic.004G258600 dual specificity protein phosphatase, putative, expressed K04459: DUSP, dual specificity MAP kinase phosphatase
14 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
15 Sobic.003G062400 PHD finger protein, putative, expressed -
16 Sobic.010G256200 expressed protein -
17 Sobic.006G257600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
18 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16
19 Sobic.006G049100 expressed protein -
20 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial


Gene co-expression network
sample Sobic002G306600 Sobic002G306600 Sobic003G004600 Sobic003G004600 Sobic002G306600--Sobic003G004600 Sobic010G059700 Sobic010G059700 Sobic002G306600--Sobic010G059700 Sobic001G458200 Sobic001G458200 Sobic002G306600--Sobic001G458200 Sobic003G128300 Sobic003G128300 Sobic002G306600--Sobic003G128300 Sobic001G157600 Sobic001G157600 Sobic002G306600--Sobic001G157600 Sobic003G221500 Sobic003G221500 Sobic002G306600--Sobic003G221500 Sobic002G267400 Sobic002G267400 Sobic002G306600--Sobic002G267400 Sobic001G487100 Sobic001G487100 Sobic002G306600--Sobic001G487100 Sobic004G088700 Sobic004G088700 Sobic002G306600--Sobic004G088700 Sobic003G004600--Sobic002G306600 Sobic003G004600--Sobic003G221500 Sobic004G256300 Sobic004G256300 Sobic003G004600--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic003G004600--Sobic003G222700 Sobic007G148400 Sobic007G148400 Sobic003G004600--Sobic007G148400 Sobic004G063300 Sobic004G063300 Sobic003G004600--Sobic004G063300 Sobic003G010900 Sobic003G010900 Sobic003G004600--Sobic003G010900 Sobic003G132000 Sobic003G132000 Sobic003G004600--Sobic003G132000 Sobic003G004600--Sobic003G128300 Sobic007G036800 Sobic007G036800 Sobic010G059700--Sobic007G036800 Sobic010G059700--Sobic002G306600 Sobic009G063800 Sobic009G063800 Sobic010G059700--Sobic009G063800 Sobic003G224300 Sobic003G224300 Sobic010G059700--Sobic003G224300 Sobic007G146600 Sobic007G146600 Sobic010G059700--Sobic007G146600 Sobic010G059700--Sobic003G222700 Sobic003G148900 Sobic003G148900 Sobic010G059700--Sobic003G148900 Sobic004G145600 Sobic004G145600 Sobic010G059700--Sobic004G145600 Sobic007G022700 Sobic007G022700 Sobic010G059700--Sobic007G022700 Sobic003G192000 Sobic003G192000 Sobic001G458200--Sobic003G192000 Sobic001G458200--Sobic003G128300 Sobic001G532100 Sobic001G532100 Sobic001G458200--Sobic001G532100 Sobic002G359900 Sobic002G359900 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic001G458200--Sobic003G148900 Sobic001G458200--Sobic002G306600 Sobic002G044000 Sobic002G044000 Sobic001G458200--Sobic002G044000 Sobic003G128300--Sobic003G132000 Sobic003G128300--Sobic001G458200 Sobic003G128300--Sobic001G487100 Sobic003G128300--Sobic003G148900 Sobic004G320100 Sobic004G320100 Sobic003G128300--Sobic004G320100 Sobic003G046300 Sobic003G046300 Sobic003G128300--Sobic003G046300 Sobic003G128300--Sobic002G306600 Sobic008G103300 Sobic008G103300 Sobic003G128300--Sobic008G103300 Sobic009G258400 Sobic009G258400 Sobic003G128300--Sobic009G258400 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic006G245700 Sobic006G245700 Sobic001G157600--Sobic006G245700 Sobic006G127500 Sobic006G127500 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G436300 Sobic001G436300 Sobic001G157600--Sobic001G436300 Sobic001G115500 Sobic001G115500 Sobic001G157600--Sobic001G115500 Sobic010G154000 Sobic010G154000 Sobic001G157600--Sobic010G154000 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000 Sobic003G221500--Sobic004G256300 Sobic002G142700 Sobic002G142700 Sobic003G221500--Sobic002G142700 Sobic003G221500--Sobic003G004600 Sobic010G236200 Sobic010G236200 Sobic003G221500--Sobic010G236200 Sobic001G462600 Sobic001G462600 Sobic003G221500--Sobic001G462600 Sobic003G221500--Sobic006G245700 Sobic009G032200 Sobic009G032200 Sobic003G221500--Sobic009G032200 Sobic003G221500--Sobic010G154000 Sobic003G221500--Sobic003G222700 Sobic002G267400--Sobic003G148900 Sobic002G059000 Sobic002G059000 Sobic002G267400--Sobic002G059000 Sobic002G357900 Sobic002G357900 Sobic002G267400--Sobic002G357900 Sobic007G192100 Sobic007G192100 Sobic002G267400--Sobic007G192100 Sobic001G036700 Sobic001G036700 Sobic002G267400--Sobic001G036700 Sobic008G111800 Sobic008G111800 Sobic002G267400--Sobic008G111800 Sobic003G062400 Sobic003G062400 Sobic002G267400--Sobic003G062400 Sobic002G267400--Sobic004G256300 Sobic007G081900 Sobic007G081900 Sobic002G267400--Sobic007G081900 Sobic001G487100--Sobic003G132000 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic001G487100--Sobic003G128300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic004G088700--Sobic003G148900 Sobic007G117800 Sobic007G117800 Sobic004G088700--Sobic007G117800 Sobic004G088700--Sobic002G306600 Sobic004G088700--Sobic001G458200 Sobic004G088700--Sobic003G224300 Sobic004G088700--Sobic010G059700 Sobic004G088700--Sobic007G192100 Sobic004G088700--Sobic002G044000 Sobic004G088700--Sobic003G128300
Octagon: transcription factors


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