Gene annotation
| Transcriptome id | Sobic.002G259100.1 |
|---|---|
| Synonym | SbSAUR13, Sb02g029410, small auxin up RNA |
| Functional annotation | "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123) auxin responsive protein, putative, expressed |
| UniProt | C5X595 |
| Pfam | PF02519 |
| Panther DB | PTHR31374 PTHR31374:SF23 |
| NCBI CDD | - |
| KEGG Orthology | K14488; SAUR family protein |
| Gene Ontology | GO:0009733; response to auxin |
Orthologs (automatic annotation)
| TAIR | AT4G34750 : SAUR-like auxin-responsive protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os09g32984.1 : auxin responsive protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a047590 , Zm00025a014312 , Zm00025a020425 |
| Brachypodium | - |
| Barley | HORVU5Hr1G076740.1 , HORVU5Hr1G076690.4 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G224200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RGH1A, putative, expressed | - |
| 2 | Sobic.001G503000 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 3 | Sobic.006G209000 | Protein transferase (Os)(PubMedID : 27208977)@transferase family domain containing protein, expressed | - |
| 4 | Sobic.005G115300 | expressed protein | - |
| 5 | Sobic.010G096700 | leaf senescence related protein, putative, expressed | - |
| 6 | Sobic.003G215300 | pleiotropic drug resistance protein, putative, expressed | - |
| 7 | Sobic.007G073000 | - | - |
| 8 | Sobic.004G312500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed | K10534: nitrate reductase (NAD(P)H) |
| 9 | Sobic.005G182800 | NB-ARC domain containing protein, expressed | - |
| 10 | Sobic.002G029600 | CBS domain containing membrane protein, putative, expressed | K00088: IMPDH, IMP dehydrogenase |
| 11 | Sobic.001G274400 | serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed | - |
| 12 | Sobic.005G071900 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 13 | Sobic.007G090472 | - | - |
| 14 | Sobic.007G154100 | aspartic proteinase nepenthesin precursor, putative, expressed | - |
| 15 | Sobic.004G014600 | disease resistance protein RGA2, putative, expressed | - |
| 16 | Sobic.001G506700 | exostosin family domain containing protein, expressed | - |
| 17 | Sobic.002G019100 | xyloglucan fucosyltransferase, putative, expressed | K13681: xyloglucan fucosyltransferase |
| 18 | Sobic.001G149400 | ankyrin repeat domain-containing protein 50, putative, expressed | - |
| 19 | Sobic.006G031100 | CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed | - |
| 20 | Sobic.008G138900 | MLA12, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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