Gene annotation
Transcriptome id Sobic.002G141900.1
Synonym NHD1, ATNHD1, Sb02g013050
Functional annotation - (PubMedID : 26976818)
Citrate transporter protein, putative, expressed
UniProt A0A1B6QB67
Pfam PF03600
Panther DB PTHR10283 PTHR10283:SF103
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G19490 : sodium:hydrogen antiporter 1
RAP-DB (Rice) LOC_Os09g02214.1 : Citrate transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a045987
Brachypodium KQJ86886 , KQJ86887
Barley HORVU5Hr1G050180.7 , HORVU5Hr1G050180.6 , HORVU5Hr1G050180.5 , HORVU5Hr1G050180.4 , HORVU5Hr1G050180.3 , HORVU5Hr1G050180.2 , HORVU5Hr1G050180.1
Wheat TraesCS5D02G165300 , TraesCS5A02G160200 , TraesCS5B02G157900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G141900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G272400 expressed protein -
2 Sobic.006G281066 - -
3 Sobic.003G267000 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed -
4 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.003G165800 UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphor yl-undecaprenol N-acetylglucosamine transferase, putative, expressed K02563: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
6 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
7 Sobic.001G104300 differentiation protein, putative, expressed K09761: 16S rRNA (uracil1498-N3)-methyltransferase
8 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
9 Sobic.001G027100 FEN1A - Putative flap endonuclease protein, expressed K04799: FEN1, flap endonuclease-1
10 Sobic.008G186500 FGGY family of carbohydrate kinases, putative, expressed K00854: xylB, xylulokinase
11 Sobic.001G441200 translocase of chloroplast 34, putative, expressed -
12 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
13 Sobic.010G157700 expressed protein -
14 Sobic.001G321400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB2, putative, expressed -
15 Sobic.006G095800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.010G134500 exonuclease, putative, expressed -
17 Sobic.001G013900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, expressed -
18 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
19 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
20 Sobic.004G109000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chalcone isomerase 3, putative, expressed -


Gene co-expression network
sample Sobic002G141900 Sobic002G141900 Sobic002G272400 Sobic002G272400 Sobic002G141900--Sobic002G272400 Sobic006G281066 Sobic006G281066 Sobic002G141900--Sobic006G281066 Sobic003G267000 Sobic003G267000 Sobic002G141900--Sobic003G267000 Sobic010G027200 Sobic010G027200 Sobic002G141900--Sobic010G027200 Sobic003G165800 Sobic003G165800 Sobic002G141900--Sobic003G165800 Sobic006G208400 Sobic006G208400 Sobic002G141900--Sobic006G208400 Sobic001G104300 Sobic001G104300 Sobic002G141900--Sobic001G104300 Sobic002G140000 Sobic002G140000 Sobic002G141900--Sobic002G140000 Sobic001G027100 Sobic001G027100 Sobic002G141900--Sobic001G027100 Sobic002G272400--Sobic002G141900 Sobic001G013900 Sobic001G013900 Sobic002G272400--Sobic001G013900 Sobic008G101900 Sobic008G101900 Sobic002G272400--Sobic008G101900 Sobic003G223000 Sobic003G223000 Sobic002G272400--Sobic003G223000 Sobic008G058000 Sobic008G058000 Sobic002G272400--Sobic008G058000 Sobic001G371700 Sobic001G371700 Sobic002G272400--Sobic001G371700 Sobic004G119400 Sobic004G119400 Sobic002G272400--Sobic004G119400 Sobic001G315400 Sobic001G315400 Sobic002G272400--Sobic001G315400 Sobic010G157700 Sobic010G157700 Sobic002G272400--Sobic010G157700 Sobic004G214400 Sobic004G214400 Sobic006G281066--Sobic004G214400 Sobic006G281066--Sobic001G104300 Sobic001G543700 Sobic001G543700 Sobic006G281066--Sobic001G543700 Sobic002G363500 Sobic002G363500 Sobic006G281066--Sobic002G363500 Sobic001G395300 Sobic001G395300 Sobic006G281066--Sobic001G395300 Sobic003G236300 Sobic003G236300 Sobic006G281066--Sobic003G236300 Sobic006G281066--Sobic010G027200 Sobic006G281066--Sobic002G140000 Sobic001G321400 Sobic001G321400 Sobic006G281066--Sobic001G321400 Sobic003G267000--Sobic002G141900 Sobic004G144400 Sobic004G144400 Sobic003G267000--Sobic004G144400 Sobic008G186500 Sobic008G186500 Sobic003G267000--Sobic008G186500 Sobic003G267000--Sobic010G157700 Sobic003G345900 Sobic003G345900 Sobic003G267000--Sobic003G345900 Sobic010G120300 Sobic010G120300 Sobic003G267000--Sobic010G120300 Sobic004G275600 Sobic004G275600 Sobic003G267000--Sobic004G275600 Sobic008G038600 Sobic008G038600 Sobic003G267000--Sobic008G038600 Sobic003G267000--Sobic006G208400 Sobic010G027200--Sobic002G140000 Sobic001G375000 Sobic001G375000 Sobic010G027200--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic010G027200--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic010G027200--Sobic007G116100 Sobic006G237100 Sobic006G237100 Sobic010G027200--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic010G027200--Sobic007G015300 Sobic005G184300 Sobic005G184300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic003G165800--Sobic001G104300 Sobic003G165800--Sobic002G141900 Sobic003G420900 Sobic003G420900 Sobic003G165800--Sobic003G420900 Sobic001G021500 Sobic001G021500 Sobic003G165800--Sobic001G021500 Sobic001G441200 Sobic001G441200 Sobic003G165800--Sobic001G441200 Sobic003G165800--Sobic006G281066 Sobic005G022000 Sobic005G022000 Sobic003G165800--Sobic005G022000 Sobic009G055900 Sobic009G055900 Sobic003G165800--Sobic009G055900 Sobic003G165800--Sobic002G363500 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic002G078000 Sobic002G078000 Sobic001G104300--Sobic002G078000 Sobic001G104300--Sobic006G281066 Sobic001G104300--Sobic005G022000 Sobic001G104300--Sobic003G165800 Sobic004G070800 Sobic004G070800 Sobic001G104300--Sobic004G070800 Sobic001G104300--Sobic001G013900 Sobic003G333700 Sobic003G333700 Sobic001G104300--Sobic003G333700 Sobic010G134500 Sobic010G134500 Sobic001G104300--Sobic010G134500 Sobic004G109000 Sobic004G109000 Sobic001G104300--Sobic004G109000 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic002G140000--Sobic001G321400 Sobic003G123200 Sobic003G123200 Sobic001G027100--Sobic003G123200 Sobic001G027100--Sobic006G208400 Sobic001G027100--Sobic004G354000 Sobic006G193300 Sobic006G193300 Sobic001G027100--Sobic006G193300 Sobic001G027100--Sobic002G141900 Sobic005G028100 Sobic005G028100 Sobic001G027100--Sobic005G028100 Sobic001G322600 Sobic001G322600 Sobic001G027100--Sobic001G322600 Sobic001G027100--Sobic004G119400 Sobic002G344500 Sobic002G344500 Sobic001G027100--Sobic002G344500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.