Gene annotation
Transcriptome id Sobic.002G137400.1,Sobic.002G137400.2
Synonym
Functional annotation protein binding protein, putative, expressed
UniProt A0A1W0W3X0 , A0A1B6QB33
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF111
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04460 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g39690.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a046085
Brachypodium PNT65207
Barley HORVU4Hr1G000090.1 , HORVU4Hr1G000090.3 , HORVU4Hr1G000090.5 , HORVU4Hr1G000090.4 , HORVU4Hr1G000090.6 , HORVU4Hr1G000090.2
Wheat TraesCS4A02G311200 , TraesCS4A02G311200 , TraesCS4B02G003100 , TraesCS4D02G003000 , TraesCS4D02G003000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
2 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
3 Sobic.010G004100 expressed protein -
4 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
5 Sobic.003G331400 expressed protein -
6 Sobic.001G281100 START domain containing protein, expressed -
7 Sobic.004G004300 expressed protein -
8 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
9 Sobic.002G031100 resistance protein LR10, putative, expressed -
10 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
12 Sobic.004G344901 - K10357: myosin V
13 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
14 Sobic.004G358400 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
15 Sobic.001G426600 SH3 domain containing protein, expressed -
16 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
17 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
18 Sobic.001G163400 roothairless 1, putative, expressed -
19 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
20 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U


Gene co-expression network
sample Sobic002G137400 Sobic002G137400 Sobic001G415300 Sobic001G415300 Sobic002G137400--Sobic001G415300 Sobic004G002100 Sobic004G002100 Sobic002G137400--Sobic004G002100 Sobic010G004100 Sobic010G004100 Sobic002G137400--Sobic010G004100 Sobic003G337300 Sobic003G337300 Sobic002G137400--Sobic003G337300 Sobic003G331400 Sobic003G331400 Sobic002G137400--Sobic003G331400 Sobic001G281100 Sobic001G281100 Sobic002G137400--Sobic001G281100 Sobic004G004300 Sobic004G004300 Sobic002G137400--Sobic004G004300 Sobic001G534800 Sobic001G534800 Sobic002G137400--Sobic001G534800 Sobic002G031100 Sobic002G031100 Sobic002G137400--Sobic002G031100 Sobic001G415300--Sobic002G137400 Sobic001G415300--Sobic004G004300 Sobic001G415300--Sobic001G281100 Sobic001G085300 Sobic001G085300 Sobic001G415300--Sobic001G085300 Sobic001G415300--Sobic003G337300 Sobic006G126100 Sobic006G126100 Sobic001G415300--Sobic006G126100 Sobic001G415300--Sobic001G534800 Sobic001G415300--Sobic004G002100 Sobic001G457900 Sobic001G457900 Sobic001G415300--Sobic001G457900 Sobic004G002100--Sobic002G137400 Sobic004G002100--Sobic001G534800 Sobic004G002100--Sobic002G031100 Sobic004G002100--Sobic001G415300 Sobic004G002100--Sobic001G281100 Sobic004G002400 Sobic004G002400 Sobic004G002100--Sobic004G002400 Sobic001G413900 Sobic001G413900 Sobic004G002100--Sobic001G413900 Sobic004G002100--Sobic006G126100 Sobic004G002100--Sobic004G004300 Sobic007G163100 Sobic007G163100 Sobic010G004100--Sobic007G163100 Sobic001G117200 Sobic001G117200 Sobic010G004100--Sobic001G117200 Sobic010G004100--Sobic002G137400 Sobic010G004100--Sobic003G337300 Sobic003G104000 Sobic003G104000 Sobic010G004100--Sobic003G104000 Sobic004G113400 Sobic004G113400 Sobic010G004100--Sobic004G113400 Sobic003G408600 Sobic003G408600 Sobic010G004100--Sobic003G408600 Sobic010G004100--Sobic004G004300 Sobic010G004100--Sobic001G415300 Sobic003G337300--Sobic003G104000 Sobic003G337300--Sobic010G004100 Sobic003G337300--Sobic002G137400 Sobic004G039600 Sobic004G039600 Sobic003G337300--Sobic004G039600 Sobic006G131000 Sobic006G131000 Sobic003G337300--Sobic006G131000 Sobic004G344901 Sobic004G344901 Sobic003G337300--Sobic004G344901 Sobic004G322400 Sobic004G322400 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic003G337300--Sobic001G415300 Sobic003G331400--Sobic004G344901 Sobic003G331400--Sobic002G137400 Sobic003G331400--Sobic001G415300 Sobic004G358400 Sobic004G358400 Sobic003G331400--Sobic004G358400 Sobic003G331400--Sobic004G004300 Sobic003G331400--Sobic002G031100 Sobic005G026200 Sobic005G026200 Sobic003G331400--Sobic005G026200 Sobic003G331400--Sobic010G004100 Sobic001G163400 Sobic001G163400 Sobic003G331400--Sobic001G163400 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic008G099800 Sobic008G099800 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic010G275500 Sobic010G275500 Sobic001G281100--Sobic010G275500 Sobic004G004300--Sobic001G281100 Sobic004G004300--Sobic005G026200 Sobic004G004300--Sobic001G534800 Sobic004G004300--Sobic006G126100 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic004G004300--Sobic001G415300 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic001G534800--Sobic004G004300 Sobic004G135400 Sobic004G135400 Sobic001G534800--Sobic004G135400 Sobic001G534800--Sobic005G003300 Sobic001G534800--Sobic005G026200 Sobic001G534800--Sobic006G012500 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic002G031100--Sobic004G002100 Sobic002G031100--Sobic002G137400 Sobic002G031100--Sobic001G415300 Sobic002G031100--Sobic003G331400 Sobic004G261600 Sobic004G261600 Sobic002G031100--Sobic004G261600 Sobic010G093100 Sobic010G093100 Sobic002G031100--Sobic010G093100 Sobic001G127200 Sobic001G127200 Sobic002G031100--Sobic001G127200 Sobic002G031100--Sobic001G281100 Sobic002G031100--Sobic004G344901
Octagon: transcription factors


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