Gene annotation
Transcriptome id Sobic.004G113400.1
Synonym ATCNGC1, Sb04g009250, CNGC1
Functional annotation cyclic nucleotide-gated ion channel 1, putative, expressed
UniProt C5XZ57
Pfam PF00027 PF00520
Panther DB PTHR10217 PTHR10217:SF465
NCBI CDD -
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT5G53130 : cyclic nucleotide gated channel 1
RAP-DB (Rice) LOC_Os06g33570.1 : cyclic nucleotide-gated ion channel 1, putative, expressed
MaizeGDB (Corn) Zm00025a034430
Brachypodium KQK18088 , KQK18089 , KQK18084 , KQK18085 , KQJ94270 , PNT75828 , KQJ94267 , KQJ94269 , KQJ94268
Barley HORVU6Hr1G044300.1 , HORVU7Hr1G079400.1 , HORVU7Hr1G079400.3 , HORVU7Hr1G079400.2 , HORVU7Hr1G079400.5 , HORVU7Hr1G079400.4 , HORVU7Hr1G079400.7 , HORVU7Hr1G079400.6 , HORVU7Hr1G079400.9 , HORVU7Hr1G079400.8 , HORVU6Hr1G044300.12 , HORVU6Hr1G044300.11 , HORVU6Hr1G044300.10 , HORVU6Hr1G044300.3 , HORVU6Hr1G044300.2 , HORVU6Hr1G044300.7 , HORVU6Hr1G044300.6 , HORVU6Hr1G044300.9 , HORVU6Hr1G044300.8 , HORVU6Hr1G044300.5 , HORVU6Hr1G044300.4
Wheat TraesCS6D02G181100 , TraesCS7B02G232600 , TraesCS6A02G196800 , TraesCS7D02G328400 , TraesCS7D02G328400 , TraesCS7A02G350300 , TraesCS7A02G350300 , TraesCS7A02G350300 , TraesCS7A02G350300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
2 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
3 Sobic.004G329400 formin, putative, expressed -
4 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
5 Sobic.008G099800 expressed protein -
6 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
7 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
9 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
10 Sobic.003G259100 GPI transamidase component family protein, putative, expressed K05289: GPI-anchor transamidase subunit GAA1
11 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
12 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
13 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
14 Sobic.001G050600 expressed protein -
15 Sobic.001G281100 START domain containing protein, expressed -
16 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
17 Sobic.004G355000 SAC9, putative, expressed -
18 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
19 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
20 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA


Gene co-expression network
sample Sobic004G113400 Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic009G010600--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic009G010600--Sobic001G474600 Sobic009G010600--Sobic001G178700 Sobic009G010600--Sobic001G058700 Sobic001G281100 Sobic001G281100 Sobic009G010600--Sobic001G281100 Sobic004G355000 Sobic004G355000 Sobic009G010600--Sobic004G355000 Sobic009G010600--Sobic004G329400 Sobic002G427050 Sobic002G427050 Sobic009G010600--Sobic002G427050 Sobic005G026200 Sobic005G026200 Sobic009G010600--Sobic005G026200 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic004G329400--Sobic004G113400 Sobic009G027300 Sobic009G027300 Sobic004G329400--Sobic009G027300 Sobic005G157000 Sobic005G157000 Sobic004G329400--Sobic005G157000 Sobic004G329400--Sobic001G058700 Sobic004G329400--Sobic004G355000 Sobic004G269200 Sobic004G269200 Sobic004G329400--Sobic004G269200 Sobic007G024700 Sobic007G024700 Sobic004G329400--Sobic007G024700 Sobic007G172400 Sobic007G172400 Sobic004G329400--Sobic007G172400 Sobic004G329400--Sobic003G408600 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic008G099800--Sobic001G281100 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic001G178700--Sobic004G113400 Sobic001G178700--Sobic009G010600 Sobic001G248300 Sobic001G248300 Sobic001G178700--Sobic001G248300 Sobic001G291000 Sobic001G291000 Sobic001G178700--Sobic001G291000 Sobic001G178700--Sobic001G474600 Sobic001G146800 Sobic001G146800 Sobic001G178700--Sobic001G146800 Sobic010G112000 Sobic010G112000 Sobic001G178700--Sobic010G112000 Sobic001G178700--Sobic007G172400 Sobic001G178700--Sobic004G329400 Sobic008G098900 Sobic008G098900 Sobic001G117200--Sobic008G098900 Sobic001G117200--Sobic003G408600 Sobic001G117200--Sobic002G430000 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G117200--Sobic001G058700 Sobic008G092600 Sobic008G092600 Sobic001G117200--Sobic008G092600 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic004G004300 Sobic004G004300 Sobic001G534800--Sobic004G004300 Sobic001G534800--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic001G534800--Sobic005G003300 Sobic001G534800--Sobic005G026200 Sobic001G534800--Sobic006G012500 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic001G207400 Sobic001G207400 Sobic002G430000--Sobic001G207400 Sobic002G430000--Sobic001G117200 Sobic002G430000--Sobic004G355000 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic002G430000--Sobic004G113400 Sobic010G139600 Sobic010G139600 Sobic002G430000--Sobic010G139600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000
Octagon: transcription factors


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