Gene annotation
Transcriptome id Sobic.002G134600.1,Sobic.002G134600.2
Synonym Sb02g011970
Functional annotation nucleic acid binding protein, putative, expressed
UniProt A0A1B6QB57
Pfam PF01424 PF12752
Panther DB PTHR15672
NCBI CDD KOG2953; mRNA-binding protein Encore
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G10770 : Single-stranded nucleic acid binding R3H protein
RAP-DB (Rice) LOC_Os09g39462.2 : nucleic acid binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a004825 , Zm00025a046182 , Zm00025a013491
Brachypodium KQJ91585
Barley HORVU4Hr1G001350.20 , HORVU4Hr1G001350.21 , HORVU4Hr1G001350.19 , HORVU4Hr1G001350.18 , HORVU1Hr1G009430.9 , HORVU1Hr1G009430.8 , HORVU1Hr1G009430.1 , HORVU1Hr1G009430.3 , HORVU1Hr1G009430.2 , HORVU1Hr1G009430.5 , HORVU1Hr1G009430.4 , HORVU1Hr1G009430.7 , HORVU1Hr1G009430.6 , HORVU6Hr1G045180.1 , HORVU4Hr1G001350.22 , HORVU1Hr1G009430.11 , HORVU1Hr1G009430.10 , HORVU1Hr1G009430.13 , HORVU1Hr1G009430.12 , HORVU5Hr1G012830.1
Wheat TraesCS4D02G007600 , TraesCS4B02G007100 , TraesCS4A02G305400
Populus PNT18360 , PNT18359 , PNT18358 , PNT18356 , PNT22237 , PNT22236


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cDNA sequences
Sobic.002G134600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
2 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
3 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
4 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
5 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
6 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
7 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
8 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
9 Sobic.010G076300 - -
10 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
11 Sobic.003G372800 expressed protein -
12 Sobic.007G186900 PP2A regulatory subunit TAP46, putative, expressed -
13 Sobic.004G246900 ankyrin repeat-containing protein, putative, expressed -
14 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
15 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
16 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
17 Sobic.010G223700 MYB transcription factor, putative, expressed -
18 Sobic.010G068500 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
19 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
20 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic002G134600 Sobic002G134600 Sobic003G309200 Sobic003G309200 Sobic002G134600--Sobic003G309200 Sobic007G006900 Sobic007G006900 Sobic002G134600--Sobic007G006900 Sobic001G226700 Sobic001G226700 Sobic002G134600--Sobic001G226700 Sobic001G425800 Sobic001G425800 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic001G362200 Sobic001G362200 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic010G223700 Sobic010G223700 Sobic003G309200--Sobic010G223700 Sobic003G309200--Sobic002G134600 Sobic001G262700 Sobic001G262700 Sobic003G309200--Sobic001G262700 Sobic008G124900 Sobic008G124900 Sobic003G309200--Sobic008G124900 Sobic003G221900 Sobic003G221900 Sobic003G309200--Sobic003G221900 Sobic006G033200 Sobic006G033200 Sobic003G309200--Sobic006G033200 Sobic002G383600 Sobic002G383600 Sobic003G309200--Sobic002G383600 Sobic010G130000 Sobic010G130000 Sobic003G309200--Sobic010G130000 Sobic001G389100 Sobic001G389100 Sobic003G309200--Sobic001G389100 Sobic007G006900--Sobic002G134600 Sobic007G006900--Sobic001G425800 Sobic003G328600 Sobic003G328600 Sobic007G006900--Sobic003G328600 Sobic007G006900--Sobic001G362200 Sobic002G400200 Sobic002G400200 Sobic007G006900--Sobic002G400200 Sobic010G249100 Sobic010G249100 Sobic007G006900--Sobic010G249100 Sobic002G067600 Sobic002G067600 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic003G119800 Sobic003G119800 Sobic007G006900--Sobic003G119800 Sobic001G226700--Sobic002G294800 Sobic001G226700--Sobic002G134600 Sobic010G265300 Sobic010G265300 Sobic001G226700--Sobic010G265300 Sobic001G226700--Sobic001G362200 Sobic008G046500 Sobic008G046500 Sobic001G226700--Sobic008G046500 Sobic007G165900 Sobic007G165900 Sobic001G226700--Sobic007G165900 Sobic004G246900 Sobic004G246900 Sobic001G226700--Sobic004G246900 Sobic006G032900 Sobic006G032900 Sobic001G226700--Sobic006G032900 Sobic010G143800 Sobic010G143800 Sobic001G226700--Sobic010G143800 Sobic001G425800--Sobic002G134600 Sobic001G425800--Sobic010G223700 Sobic001G425800--Sobic007G006900 Sobic001G425800--Sobic008G046500 Sobic001G425800--Sobic010G249100 Sobic001G425800--Sobic001G226700 Sobic002G257200 Sobic002G257200 Sobic001G425800--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic001G425800--Sobic004G146800 Sobic001G425800--Sobic008G124900 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic003G332500 Sobic003G332500 Sobic001G362200--Sobic003G332500 Sobic003G109700 Sobic003G109700 Sobic001G362200--Sobic003G109700 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic004G192200 Sobic004G192200 Sobic001G362200--Sobic004G192200 Sobic004G072100 Sobic004G072100 Sobic001G362200--Sobic004G072100 Sobic001G362200--Sobic002G134600 Sobic007G183900 Sobic007G183900 Sobic001G362200--Sobic007G183900 Sobic001G541100 Sobic001G541100 Sobic009G219000--Sobic001G541100 Sobic001G323000 Sobic001G323000 Sobic009G219000--Sobic001G323000 Sobic001G261456 Sobic001G261456 Sobic009G219000--Sobic001G261456 Sobic009G219000--Sobic008G046500 Sobic001G466700 Sobic001G466700 Sobic009G219000--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic009G219000--Sobic004G274400 Sobic009G138100 Sobic009G138100 Sobic009G219000--Sobic009G138100 Sobic001G105500 Sobic001G105500 Sobic009G219000--Sobic001G105500 Sobic001G371200 Sobic001G371200 Sobic009G219000--Sobic001G371200 Sobic001G122832--Sobic003G221900 Sobic001G332500 Sobic001G332500 Sobic001G122832--Sobic001G332500 Sobic001G122832--Sobic005G027400 Sobic003G029700 Sobic003G029700 Sobic001G122832--Sobic003G029700 Sobic003G411900 Sobic003G411900 Sobic001G122832--Sobic003G411900 Sobic003G316500 Sobic003G316500 Sobic001G122832--Sobic003G316500 Sobic001G122832--Sobic010G223700 Sobic001G122832--Sobic002G294800 Sobic001G122832--Sobic002G211800 Sobic001G191600 Sobic001G191600 Sobic010G076300--Sobic001G191600 Sobic010G076300--Sobic002G134600 Sobic010G076300--Sobic010G223700 Sobic010G076300--Sobic001G226700 Sobic010G076300--Sobic003G109700 Sobic009G103600 Sobic009G103600 Sobic010G076300--Sobic009G103600 Sobic001G222250 Sobic001G222250 Sobic010G076300--Sobic001G222250 Sobic001G298600 Sobic001G298600 Sobic010G076300--Sobic001G298600 Sobic010G076300--Sobic002G294800
Octagon: transcription factors


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