Hb_085922_010

Information

Type -
Description -
Location Contig85922: 4870-6980
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085922_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000504_250 0.0633960978 - - -
3 Hb_155880_010 0.0684701352 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_003206_040 0.1744054584 - - Auxin efflux carrier component, putative [Ricinus communis]
5 Hb_141990_060 0.1752874235 - - -
6 Hb_004409_010 0.1776216743 - - -
7 Hb_021470_010 0.1816302795 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_030449_010 0.1878755081 - - -
9 Hb_180003_010 0.1889374645 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
10 Hb_096257_010 0.1980006003 - - -
11 Hb_000894_050 0.1987345795 - - -
12 Hb_011113_020 0.2146948071 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
13 Hb_007586_010 0.2508820271 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
14 Hb_123056_010 0.29364894 - - -
15 Hb_001140_230 0.3123727859 - - -
16 Hb_012500_010 0.3258941004 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_001703_100 0.3262322667 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
18 Hb_002269_010 0.3326753762 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
19 Hb_000733_110 0.3337296712 - - hypothetical protein JCGZ_01360 [Jatropha curcas]
20 Hb_001217_060 0.3375776498 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_085922_010 Hb_085922_010 Hb_000504_250 Hb_000504_250 Hb_085922_010--Hb_000504_250 Hb_155880_010 Hb_155880_010 Hb_085922_010--Hb_155880_010 Hb_003206_040 Hb_003206_040 Hb_085922_010--Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_085922_010--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_085922_010--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_085922_010--Hb_021470_010 Hb_000504_250--Hb_155880_010 Hb_000504_250--Hb_003206_040 Hb_000504_250--Hb_141990_060 Hb_000504_250--Hb_004409_010 Hb_000504_250--Hb_021470_010 Hb_155880_010--Hb_003206_040 Hb_155880_010--Hb_141990_060 Hb_155880_010--Hb_004409_010 Hb_155880_010--Hb_021470_010 Hb_003206_040--Hb_141990_060 Hb_003206_040--Hb_004409_010 Hb_003206_040--Hb_021470_010 Hb_030449_010 Hb_030449_010 Hb_003206_040--Hb_030449_010 Hb_180003_010 Hb_180003_010 Hb_003206_040--Hb_180003_010 Hb_096257_010 Hb_096257_010 Hb_003206_040--Hb_096257_010 Hb_141990_060--Hb_004409_010 Hb_141990_060--Hb_021470_010 Hb_141990_060--Hb_030449_010 Hb_141990_060--Hb_180003_010 Hb_141990_060--Hb_096257_010 Hb_004409_010--Hb_021470_010 Hb_004409_010--Hb_030449_010 Hb_004409_010--Hb_180003_010 Hb_004409_010--Hb_096257_010 Hb_021470_010--Hb_030449_010 Hb_021470_010--Hb_180003_010 Hb_021470_010--Hb_096257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0478727 0.0159497 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis