Hb_068578_010

Information

Type -
Description -
Location Contig68578: 69-428
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012472403.1
description PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068578_010 0.0 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
2 Hb_001629_070 0.0002592857 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
3 Hb_002982_060 0.0040492205 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
4 Hb_189099_010 0.0092273817 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
5 Hb_009813_040 0.0104347646 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
6 Hb_099586_010 0.0117019419 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_000001_030 0.0142217096 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_002656_040 0.0144488361 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_084299_010 0.0146917625 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
10 Hb_008269_020 0.0152858852 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000118_050 0.0153533629 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_065059_010 0.0156113169 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
13 Hb_000482_100 0.0164212584 - - -
14 Hb_072825_010 0.0224134636 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
15 Hb_000283_160 0.0258760734 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
16 Hb_031104_010 0.0290788604 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_048482_010 0.0316252044 - - -
18 Hb_104984_010 0.0363236537 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
19 Hb_000206_260 0.0372113606 - - cysteine protease, putative [Ricinus communis]
20 Hb_041626_010 0.0400230668 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_068578_010 Hb_068578_010 Hb_001629_070 Hb_001629_070 Hb_068578_010--Hb_001629_070 Hb_002982_060 Hb_002982_060 Hb_068578_010--Hb_002982_060 Hb_189099_010 Hb_189099_010 Hb_068578_010--Hb_189099_010 Hb_009813_040 Hb_009813_040 Hb_068578_010--Hb_009813_040 Hb_099586_010 Hb_099586_010 Hb_068578_010--Hb_099586_010 Hb_000001_030 Hb_000001_030 Hb_068578_010--Hb_000001_030 Hb_001629_070--Hb_002982_060 Hb_001629_070--Hb_189099_010 Hb_001629_070--Hb_009813_040 Hb_001629_070--Hb_099586_010 Hb_001629_070--Hb_000001_030 Hb_002982_060--Hb_009813_040 Hb_002982_060--Hb_099586_010 Hb_002982_060--Hb_000001_030 Hb_002656_040 Hb_002656_040 Hb_002982_060--Hb_002656_040 Hb_000482_100 Hb_000482_100 Hb_189099_010--Hb_000482_100 Hb_189099_010--Hb_002982_060 Hb_189099_010--Hb_009813_040 Hb_189099_010--Hb_099586_010 Hb_009813_040--Hb_099586_010 Hb_009813_040--Hb_000001_030 Hb_009813_040--Hb_002656_040 Hb_084299_010 Hb_084299_010 Hb_009813_040--Hb_084299_010 Hb_008269_020 Hb_008269_020 Hb_009813_040--Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_009813_040--Hb_000118_050 Hb_099586_010--Hb_000001_030 Hb_099586_010--Hb_002656_040 Hb_099586_010--Hb_084299_010 Hb_099586_010--Hb_008269_020 Hb_099586_010--Hb_000118_050 Hb_000001_030--Hb_002656_040 Hb_000001_030--Hb_084299_010 Hb_000001_030--Hb_008269_020 Hb_000001_030--Hb_000118_050 Hb_065059_010 Hb_065059_010 Hb_000001_030--Hb_065059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0921835 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.326837

CAGE analysis