Hb_001629_070

Information

Type transcription factor
Description TF Family: ULT
Location Contig1629: 49444-51872
Sequence    

Annotation

kegg
ID rcu:RCOM_0380560
description Protein ULTRAPETALA2, putative
nr
ID XP_002533710.1
description Protein ULTRAPETALA2, putative [Ricinus communis]
swissprot
ID Q8S8I2
description Protein ULTRAPETALA 2 OS=Arabidopsis thaliana GN=ULT2 PE=2 SV=1
trembl
ID B9T641
description Protein ULTRAPETALA2, putative OS=Ricinus communis GN=RCOM_0380560 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein ultrapetala 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_070 0.0 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
2 Hb_068578_010 0.0002592857 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
3 Hb_002982_060 0.0043085031 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
4 Hb_189099_010 0.00896811 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
5 Hb_009813_040 0.0106940307 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
6 Hb_099586_010 0.0119612031 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_000001_030 0.0144809591 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_002656_040 0.0147080844 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_084299_010 0.0149510095 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
10 Hb_008269_020 0.015545129 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000118_050 0.0156126064 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_065059_010 0.0158705589 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
13 Hb_000482_100 0.0161620172 - - -
14 Hb_072825_010 0.0226726586 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
15 Hb_000283_160 0.0261352378 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
16 Hb_031104_010 0.0293379923 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_048482_010 0.0318843075 - - -
18 Hb_104984_010 0.0365826969 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
19 Hb_000206_260 0.0374703914 - - cysteine protease, putative [Ricinus communis]
20 Hb_041626_010 0.0402820564 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_001629_070 Hb_001629_070 Hb_068578_010 Hb_068578_010 Hb_001629_070--Hb_068578_010 Hb_002982_060 Hb_002982_060 Hb_001629_070--Hb_002982_060 Hb_189099_010 Hb_189099_010 Hb_001629_070--Hb_189099_010 Hb_009813_040 Hb_009813_040 Hb_001629_070--Hb_009813_040 Hb_099586_010 Hb_099586_010 Hb_001629_070--Hb_099586_010 Hb_000001_030 Hb_000001_030 Hb_001629_070--Hb_000001_030 Hb_068578_010--Hb_002982_060 Hb_068578_010--Hb_189099_010 Hb_068578_010--Hb_009813_040 Hb_068578_010--Hb_099586_010 Hb_068578_010--Hb_000001_030 Hb_002982_060--Hb_009813_040 Hb_002982_060--Hb_099586_010 Hb_002982_060--Hb_000001_030 Hb_002656_040 Hb_002656_040 Hb_002982_060--Hb_002656_040 Hb_000482_100 Hb_000482_100 Hb_189099_010--Hb_000482_100 Hb_189099_010--Hb_002982_060 Hb_189099_010--Hb_009813_040 Hb_189099_010--Hb_099586_010 Hb_009813_040--Hb_099586_010 Hb_009813_040--Hb_000001_030 Hb_009813_040--Hb_002656_040 Hb_084299_010 Hb_084299_010 Hb_009813_040--Hb_084299_010 Hb_008269_020 Hb_008269_020 Hb_009813_040--Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_009813_040--Hb_000118_050 Hb_099586_010--Hb_000001_030 Hb_099586_010--Hb_002656_040 Hb_099586_010--Hb_084299_010 Hb_099586_010--Hb_008269_020 Hb_099586_010--Hb_000118_050 Hb_000001_030--Hb_002656_040 Hb_000001_030--Hb_084299_010 Hb_000001_030--Hb_008269_020 Hb_000001_030--Hb_000118_050 Hb_065059_010 Hb_065059_010 Hb_000001_030--Hb_065059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.035213 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.124664

CAGE analysis