Hb_003203_010

Information

Type -
Description -
Location Contig3203: 1681-2910
Sequence    

Annotation

kegg
ID tcc:TCM_009243
description hypothetical protein
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061E4P4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_009243 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003203_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_001098_060 0.0026071883 - - -
3 Hb_001140_120 0.0034673172 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
4 Hb_000762_100 0.0037701854 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
5 Hb_007292_040 0.0041998951 - - Plastid developmental protein DAG [Theobroma cacao]
6 Hb_004586_100 0.0045316702 - - PREDICTED: uncharacterized protein LOC105120428 isoform X2 [Populus euphratica]
7 Hb_028447_010 0.0050185603 - - hypothetical protein RCOM_1967580 [Ricinus communis]
8 Hb_000018_080 0.0063177665 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
9 Hb_001205_260 0.006582651 - - DWNN domain isoform 2 [Theobroma cacao]
10 Hb_002471_030 0.0093268966 - - PREDICTED: cyclin-J18 [Jatropha curcas]
11 Hb_014223_030 0.00975398 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
12 Hb_004669_010 0.0099374677 - - hypothetical protein JCGZ_26481 [Jatropha curcas]
13 Hb_088508_010 0.0105232587 - - cytochrome P450, putative [Ricinus communis]
14 Hb_014776_010 0.0110600077 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
15 Hb_007138_020 0.0120092627 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
16 Hb_001414_070 0.0121866294 - - Zinc finger protein GIS2 [Medicago truncatula]
17 Hb_000245_010 0.017563351 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
18 Hb_001158_210 0.0198386803 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005858_010 0.0241221073 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
20 Hb_012758_020 0.0260473751 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003203_010 Hb_003203_010 Hb_001098_060 Hb_001098_060 Hb_003203_010--Hb_001098_060 Hb_001140_120 Hb_001140_120 Hb_003203_010--Hb_001140_120 Hb_000762_100 Hb_000762_100 Hb_003203_010--Hb_000762_100 Hb_007292_040 Hb_007292_040 Hb_003203_010--Hb_007292_040 Hb_004586_100 Hb_004586_100 Hb_003203_010--Hb_004586_100 Hb_028447_010 Hb_028447_010 Hb_003203_010--Hb_028447_010 Hb_001098_060--Hb_001140_120 Hb_001098_060--Hb_000762_100 Hb_001098_060--Hb_007292_040 Hb_000018_080 Hb_000018_080 Hb_001098_060--Hb_000018_080 Hb_002471_030 Hb_002471_030 Hb_001098_060--Hb_002471_030 Hb_001140_120--Hb_000762_100 Hb_001140_120--Hb_007292_040 Hb_001140_120--Hb_000018_080 Hb_001140_120--Hb_002471_030 Hb_000762_100--Hb_007292_040 Hb_000762_100--Hb_000018_080 Hb_000762_100--Hb_002471_030 Hb_007292_040--Hb_000018_080 Hb_007292_040--Hb_002471_030 Hb_004586_100--Hb_028447_010 Hb_001205_260 Hb_001205_260 Hb_004586_100--Hb_001205_260 Hb_004669_010 Hb_004669_010 Hb_004586_100--Hb_004669_010 Hb_004586_100--Hb_001098_060 Hb_004586_100--Hb_001140_120 Hb_028447_010--Hb_001205_260 Hb_028447_010--Hb_004669_010 Hb_028447_010--Hb_001098_060 Hb_028447_010--Hb_001140_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0163133 0.0321483 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis