Hb_001999_110

Information

Type -
Description -
Location Contig1999: 143458-143847
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15510g
description hypothetical protein
nr
ID XP_011021261.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GCR8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15510g PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_110 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
2 Hb_000635_120 0.0001162071 - - -
3 Hb_011457_060 0.0010167359 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
4 Hb_012368_060 0.0014315817 - - -
5 Hb_035492_010 0.0036751605 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
6 Hb_010267_010 0.0247250272 - - -
7 Hb_010120_010 0.0256141393 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_001369_330 0.026276322 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004881_110 0.026349556 - - -
10 Hb_000265_180 0.0281650609 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
11 Hb_003388_090 0.0290366353 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
12 Hb_000258_190 0.0295216297 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_000143_040 0.030089823 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
14 Hb_011016_040 0.030114424 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_083103_030 0.1090166423 - - putative retrotransposon protein [Malus domestica]
16 Hb_103832_030 0.1128386164 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_172503_010 0.1136325138 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
18 Hb_187134_010 0.1260332641 - - -
19 Hb_115472_010 0.1285964443 - - -
20 Hb_002740_020 0.1333905203 - - -

Gene co-expression network

sample Hb_001999_110 Hb_001999_110 Hb_000635_120 Hb_000635_120 Hb_001999_110--Hb_000635_120 Hb_011457_060 Hb_011457_060 Hb_001999_110--Hb_011457_060 Hb_012368_060 Hb_012368_060 Hb_001999_110--Hb_012368_060 Hb_035492_010 Hb_035492_010 Hb_001999_110--Hb_035492_010 Hb_010267_010 Hb_010267_010 Hb_001999_110--Hb_010267_010 Hb_010120_010 Hb_010120_010 Hb_001999_110--Hb_010120_010 Hb_000635_120--Hb_011457_060 Hb_000635_120--Hb_012368_060 Hb_000635_120--Hb_035492_010 Hb_000635_120--Hb_010267_010 Hb_000635_120--Hb_010120_010 Hb_011457_060--Hb_012368_060 Hb_011457_060--Hb_035492_010 Hb_011457_060--Hb_010267_010 Hb_011457_060--Hb_010120_010 Hb_012368_060--Hb_035492_010 Hb_012368_060--Hb_010267_010 Hb_012368_060--Hb_010120_010 Hb_035492_010--Hb_010267_010 Hb_035492_010--Hb_010120_010 Hb_010267_010--Hb_010120_010 Hb_001369_330 Hb_001369_330 Hb_010267_010--Hb_001369_330 Hb_004881_110 Hb_004881_110 Hb_010267_010--Hb_004881_110 Hb_000265_180 Hb_000265_180 Hb_010267_010--Hb_000265_180 Hb_003388_090 Hb_003388_090 Hb_010267_010--Hb_003388_090 Hb_000258_190 Hb_000258_190 Hb_010267_010--Hb_000258_190 Hb_010120_010--Hb_001369_330 Hb_010120_010--Hb_004881_110 Hb_010120_010--Hb_000265_180 Hb_010120_010--Hb_003388_090 Hb_010120_010--Hb_000258_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.327962 0 0.152738 0

CAGE analysis