Hb_000051_100

Information

Type -
Description -
Location Contig51: 181265-191390
Sequence    

Annotation

kegg
ID egr:104452437
description probable leucine-rich repeat receptor-like protein kinase At5g49770
nr
ID EYU33238.1
description hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
swissprot
ID Q9LT96
description Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1
trembl
ID A0A022R0W1
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025286mg PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_100 0.0 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
2 Hb_003898_010 0.0297702153 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_010523_020 0.0297764915 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_002281_060 0.0299080765 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
5 Hb_001115_060 0.0300092319 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
6 Hb_000668_030 0.0300736507 - - -
7 Hb_000789_210 0.0303712598 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
8 Hb_004984_090 0.0317006588 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
9 Hb_001623_450 0.0327417196 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
10 Hb_000199_050 0.0328360483 - - Gibberellin 20 oxidase, putative [Ricinus communis]
11 Hb_005300_050 0.0391526001 - - hypothetical protein VITISV_001308 [Vitis vinifera]
12 Hb_003908_010 0.0393430332 - - polyprotein [Oryza australiensis]
13 Hb_001255_070 0.0398532039 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000917_020 0.040296453 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_007524_040 0.0404152049 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
16 Hb_001385_020 0.0414518038 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
17 Hb_000288_050 0.0417868322 - - conserved hypothetical protein [Ricinus communis]
18 Hb_133913_010 0.0420004439 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_005352_020 0.0440411048 - - -
20 Hb_049490_010 0.0494751416 - - hypothetical protein VITISV_013805 [Vitis vinifera]

Gene co-expression network

sample Hb_000051_100 Hb_000051_100 Hb_003898_010 Hb_003898_010 Hb_000051_100--Hb_003898_010 Hb_010523_020 Hb_010523_020 Hb_000051_100--Hb_010523_020 Hb_002281_060 Hb_002281_060 Hb_000051_100--Hb_002281_060 Hb_001115_060 Hb_001115_060 Hb_000051_100--Hb_001115_060 Hb_000668_030 Hb_000668_030 Hb_000051_100--Hb_000668_030 Hb_000789_210 Hb_000789_210 Hb_000051_100--Hb_000789_210 Hb_003898_010--Hb_010523_020 Hb_003898_010--Hb_002281_060 Hb_003898_010--Hb_001115_060 Hb_003898_010--Hb_000668_030 Hb_003898_010--Hb_000789_210 Hb_004984_090 Hb_004984_090 Hb_003898_010--Hb_004984_090 Hb_010523_020--Hb_002281_060 Hb_010523_020--Hb_001115_060 Hb_010523_020--Hb_000668_030 Hb_010523_020--Hb_000789_210 Hb_010523_020--Hb_004984_090 Hb_002281_060--Hb_001115_060 Hb_002281_060--Hb_000668_030 Hb_002281_060--Hb_000789_210 Hb_002281_060--Hb_004984_090 Hb_001115_060--Hb_000668_030 Hb_001115_060--Hb_000789_210 Hb_001115_060--Hb_004984_090 Hb_000668_030--Hb_000789_210 Hb_000668_030--Hb_004984_090 Hb_000789_210--Hb_004984_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0114962 0.00568003 0 0.00792486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.821009 13.3241

CAGE analysis