Gene annotation
Transcriptome id Sobic.010G217100.3,Sobic.010G217100.2,Sobic.010G217100.1
Synonym Sb10g026320, ATUBC22, UBC22
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5Z7A3
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF57
NCBI CDD KOG0423; Ubiquitin-protein ligase
KEGG Orthology K10583; UBE2S, ubiquitin-conjugating enzyme E2 S
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05080 : ubiquitin-conjugating enzyme 22
RAP-DB (Rice) LOC_Os06g45000.2,LOC_Os06g45000.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a051660 , Zm00025a041993
Brachypodium PNT75394 , PNT75395 , KQK16943 , KQK16942
Barley HORVU7Hr1G110260.6 , HORVU7Hr1G110260.5 , HORVU7Hr1G110260.1 , HORVU7Hr1G110340.1 , HORVU7Hr1G110340.2 , HORVU7Hr1G110340.3 , HORVU7Hr1G110360.4 , HORVU7Hr1G110360.2 , HORVU7Hr1G110360.3 , HORVU7Hr1G110360.1
Wheat TraesCS7B02G395100 , TraesCS7D02G477600 , TraesCS7B02G396100 , TraesCS7B02G396100 , TraesCS7A02G491300 , TraesCS7A02G491300 , TraesCS7A02G491300 , TraesCS7A02G491500 , TraesCS6B02G181200 , TraesCS6A02G153500 , TraesCS6A02G153500
Populus -


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cDNA sequences
Sobic.010G217100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
2 Sobic.010G144900 fiber protein Fb34, putative, expressed -
3 Sobic.009G124200 down-regulated TF in developmental senescence(PubMedID : 27586543)@SMOS1(Ortholog in rice:Hirano et al. (2017))(PubMedID : 31659924)@AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
4 Sobic.010G138500 lectin protein kinase family protein, putative, expressed -
5 Sobic.003G003700 ABIL2, putative, expressed -
6 Sobic.009G224600 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
7 Sobic.001G468500 ethylene-responsive element-binding protein, putative, expressed -
8 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
9 Sobic.006G191700 expansin precursor, putative, expressed -
10 Sobic.002G139000 OsFBX237 - F-box domain containing protein, expressed -
11 Sobic.007G191800 expressed protein -
12 Sobic.004G331200 expressed protein -
13 Sobic.006G094100 expressed protein -
14 Sobic.008G176800 expressed protein -
15 Sobic.001G030400 protein kinase family protein, putative, expressed -
16 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
17 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
18 Sobic.007G221600 AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
19 Sobic.005G110442 - K00432: gpx, btuE, glutathione peroxidase
20 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase


Gene co-expression network
sample Sobic010G217100 Sobic010G217100 Sobic006G104100 Sobic006G104100 Sobic010G217100--Sobic006G104100 Sobic010G144900 Sobic010G144900 Sobic010G217100--Sobic010G144900 Sobic009G124200 Sobic009G124200 Sobic010G217100--Sobic009G124200 Sobic010G138500 Sobic010G138500 Sobic010G217100--Sobic010G138500 Sobic003G003700 Sobic003G003700 Sobic010G217100--Sobic003G003700 Sobic009G224600 Sobic009G224600 Sobic010G217100--Sobic009G224600 Sobic001G468500 Sobic001G468500 Sobic010G217100--Sobic001G468500 Sobic001G226100 Sobic001G226100 Sobic010G217100--Sobic001G226100 Sobic006G191700 Sobic006G191700 Sobic010G217100--Sobic006G191700 Sobic006G104100--Sobic010G144900 Sobic007G191800 Sobic007G191800 Sobic006G104100--Sobic007G191800 Sobic005G110442 Sobic005G110442 Sobic006G104100--Sobic005G110442 Sobic006G104100--Sobic010G217100 Sobic001G116000 Sobic001G116000 Sobic006G104100--Sobic001G116000 Sobic006G038200 Sobic006G038200 Sobic006G104100--Sobic006G038200 Sobic009G189200 Sobic009G189200 Sobic006G104100--Sobic009G189200 Sobic001G196100 Sobic001G196100 Sobic006G104100--Sobic001G196100 Sobic006G104100--Sobic006G191700 Sobic010G144900--Sobic009G189200 Sobic010G144900--Sobic006G104100 Sobic001G397000 Sobic001G397000 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic002G236700 Sobic002G236700 Sobic010G144900--Sobic002G236700 Sobic001G371100 Sobic001G371100 Sobic010G144900--Sobic001G371100 Sobic004G331200 Sobic004G331200 Sobic009G124200--Sobic004G331200 Sobic009G124200--Sobic010G217100 Sobic001G030400 Sobic001G030400 Sobic009G124200--Sobic001G030400 Sobic009G124200--Sobic009G224600 Sobic006G094100 Sobic006G094100 Sobic009G124200--Sobic006G094100 Sobic007G009000 Sobic007G009000 Sobic009G124200--Sobic007G009000 Sobic009G124200--Sobic003G003700 Sobic009G124200--Sobic002G236700 Sobic009G124200--Sobic010G144900 Sobic004G134100 Sobic004G134100 Sobic010G138500--Sobic004G134100 Sobic001G215900 Sobic001G215900 Sobic010G138500--Sobic001G215900 Sobic010G138500--Sobic010G217100 Sobic010G242900 Sobic010G242900 Sobic010G138500--Sobic010G242900 Sobic001G366800 Sobic001G366800 Sobic010G138500--Sobic001G366800 Sobic001G222400 Sobic001G222400 Sobic010G138500--Sobic001G222400 Sobic002G143000 Sobic002G143000 Sobic010G138500--Sobic002G143000 Sobic002G319200 Sobic002G319200 Sobic010G138500--Sobic002G319200 Sobic004G104800 Sobic004G104800 Sobic010G138500--Sobic004G104800 Sobic003G003700--Sobic001G468500 Sobic003G420100 Sobic003G420100 Sobic003G003700--Sobic003G420100 Sobic008G143000 Sobic008G143000 Sobic003G003700--Sobic008G143000 Sobic009G242501 Sobic009G242501 Sobic003G003700--Sobic009G242501 Sobic003G247600 Sobic003G247600 Sobic003G003700--Sobic003G247600 Sobic001G528600 Sobic001G528600 Sobic003G003700--Sobic001G528600 Sobic008G035900 Sobic008G035900 Sobic003G003700--Sobic008G035900 Sobic008G157000 Sobic008G157000 Sobic003G003700--Sobic008G157000 Sobic004G286700 Sobic004G286700 Sobic003G003700--Sobic004G286700 Sobic009G224600--Sobic010G144900 Sobic003G084300 Sobic003G084300 Sobic009G224600--Sobic003G084300 Sobic009G224600--Sobic010G217100 Sobic009G224600--Sobic009G189200 Sobic001G412500 Sobic001G412500 Sobic009G224600--Sobic001G412500 Sobic009G224600--Sobic009G124200 Sobic009G224600--Sobic006G094100 Sobic009G165500 Sobic009G165500 Sobic009G224600--Sobic009G165500 Sobic001G418000 Sobic001G418000 Sobic009G224600--Sobic001G418000 Sobic003G283600 Sobic003G283600 Sobic001G468500--Sobic003G283600 Sobic001G468500--Sobic003G003700 Sobic001G468500--Sobic004G286700 Sobic010G277300 Sobic010G277300 Sobic001G468500--Sobic010G277300 Sobic006G133700 Sobic006G133700 Sobic001G468500--Sobic006G133700 Sobic001G468500--Sobic001G030400 Sobic002G238500 Sobic002G238500 Sobic001G468500--Sobic002G238500 Sobic004G036800 Sobic004G036800 Sobic001G468500--Sobic004G036800 Sobic001G468500--Sobic004G331200 Sobic010G251100 Sobic010G251100 Sobic001G226100--Sobic010G251100 Sobic001G402300 Sobic001G402300 Sobic001G226100--Sobic001G402300 Sobic004G141700 Sobic004G141700 Sobic001G226100--Sobic004G141700 Sobic009G232400 Sobic009G232400 Sobic001G226100--Sobic009G232400 Sobic002G306400 Sobic002G306400 Sobic001G226100--Sobic002G306400 Sobic007G118000 Sobic007G118000 Sobic001G226100--Sobic007G118000 Sobic006G252100 Sobic006G252100 Sobic001G226100--Sobic006G252100 Sobic001G512600 Sobic001G512600 Sobic001G226100--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic001G226100--Sobic001G054200 Sobic001G261549 Sobic001G261549 Sobic006G191700--Sobic001G261549 Sobic001G107200 Sobic001G107200 Sobic006G191700--Sobic001G107200 Sobic006G278100 Sobic006G278100 Sobic006G191700--Sobic006G278100 Sobic006G191700--Sobic009G189200 Sobic006G191700--Sobic001G528600 Sobic007G094400 Sobic007G094400 Sobic006G191700--Sobic007G094400 Sobic008G096200 Sobic008G096200 Sobic006G191700--Sobic008G096200 Sobic006G191700--Sobic004G331200 Sobic001G078600 Sobic001G078600 Sobic006G191700--Sobic001G078600
Octagon: transcription factors


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