Gene annotation
Transcriptome id Sobic.009G088100.1
Synonym Sb09g008120
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5YV93
Pfam PF00010 PF14215
Panther DB PTHR11514 PTHR11514:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G16430 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g13460.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
2 Sobic.007G045600 MSP domain containing protein, expressed -
3 Sobic.003G330500 peptidase, T1 family, putative, expressed -
4 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
5 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
6 Sobic.003G261400 DUF292 domain containing protein, expressed -
7 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
8 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
9 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
10 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
11 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
12 Sobic.003G261500 lipase, putative, expressed -
13 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
16 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
17 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
18 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
19 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
20 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -


Gene co-expression network
sample Sobic009G088100 Sobic009G088100 Sobic007G142500 Sobic007G142500 Sobic009G088100--Sobic007G142500 Sobic007G045600 Sobic007G045600 Sobic009G088100--Sobic007G045600 Sobic003G330500 Sobic003G330500 Sobic009G088100--Sobic003G330500 Sobic004G224900 Sobic004G224900 Sobic009G088100--Sobic004G224900 Sobic001G236300 Sobic001G236300 Sobic009G088100--Sobic001G236300 Sobic003G261400 Sobic003G261400 Sobic009G088100--Sobic003G261400 Sobic001G458700 Sobic001G458700 Sobic009G088100--Sobic001G458700 Sobic003G124800 Sobic003G124800 Sobic009G088100--Sobic003G124800 Sobic007G176200 Sobic007G176200 Sobic009G088100--Sobic007G176200 Sobic007G142500--Sobic007G045600 Sobic007G142500--Sobic001G458700 Sobic001G461900 Sobic001G461900 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic003G323600 Sobic003G323600 Sobic007G142500--Sobic003G323600 Sobic007G142500--Sobic007G176200 Sobic007G142500--Sobic009G088100 Sobic004G335000 Sobic004G335000 Sobic007G142500--Sobic004G335000 Sobic002G281300 Sobic002G281300 Sobic007G142500--Sobic002G281300 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic006G252200 Sobic006G252200 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic004G138800 Sobic004G138800 Sobic003G330500--Sobic004G138800 Sobic001G096100 Sobic001G096100 Sobic003G330500--Sobic001G096100 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic004G224900--Sobic001G236300 Sobic003G367451 Sobic003G367451 Sobic001G236300--Sobic003G367451 Sobic001G236300--Sobic004G224900 Sobic001G236300--Sobic007G114200 Sobic004G272800 Sobic004G272800 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G132100 Sobic001G132100 Sobic001G236300--Sobic001G132100 Sobic001G236300--Sobic006G252200 Sobic001G236300--Sobic004G335000 Sobic001G236300--Sobic007G045600 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic003G261400--Sobic007G045600 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G458700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic001G458700--Sobic003G330500 Sobic001G458700--Sobic001G283200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic009G198500 Sobic009G198500 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic003G124800--Sobic006G232200 Sobic003G124800--Sobic001G502200 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic002G428200 Sobic002G428200 Sobic007G176200--Sobic002G428200 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000
Octagon: transcription factors


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