Gene annotation
Transcriptome id Sobic.009G055300.1
Synonym RCI3A, Sb09g004660, RCI3
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
peroxidase precursor, putative, expressed
UniProt C5Z0N9
Pfam PF00141
Panther DB PTHR31235 PTHR31235:SF19
NCBI CDD -
KEGG Orthology K00430; peroxidase
Gene Ontology GO:0006979; response to oxidative stress GO:0004601peroxidase activity


Orthologs (automatic annotation)
TAIR AT1G05260 : Peroxidase superfamily protein
RAP-DB (Rice) LOC_Os05g06970.1 : peroxidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a036127 , Zm00025a014309 , Zm00025a042945 , Zm00025a042941
Brachypodium KQK07689 , KQK07348 , KQK18502
Barley HORVU2Hr1G063460.5 , HORVU2Hr1G063460.4 , HORVU2Hr1G063460.3 , HORVU2Hr1G063460.2 , HORVU1Hr1G023750.1 , HORVU1Hr1G023750.2 , HORVU6Hr1G076470.2 , HORVU6Hr1G076470.3 , HORVU0Hr1G037830.1 , HORVU1Hr1G016820.2 , HORVU1Hr1G016820.1
Wheat TraesCS1A02G356100 , TraesCS7D02G262400 , TraesCS1D02G110600 , TraesCS7D02G195700 , TraesCS7A02G262000 , TraesCS1A02G108400 , TraesCS7B02G159300 , TraesCSU02G096700 , TraesCS7D02G084900 , TraesCSU02G163200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G230200 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.008G105800 cytochrome P450, putative, expressed -
4 Sobic.002G063700 NB-ARC domain containing protein, expressed -
5 Sobic.001G415100 terpene synthase, putative, expressed -
6 Sobic.007G202480 - -
7 Sobic.004G299500 - -
8 Sobic.005G069332 - -
9 Sobic.005G069166 - -
10 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
11 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
12 Sobic.001G153100 sulfate transporter, putative, expressed K17470: sulfate transporter 1, high-affinity
13 Sobic.007G015000 methyltransferase domain containing protein, expressed -
14 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
15 Sobic.010G010000 plant protein of unknown function domain containing protein, expressed -
16 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
17 Sobic.006G171100 expansin precursor, putative, expressed -
18 Sobic.003G441601 - -
19 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -


Gene co-expression network
sample Sobic009G055300 Sobic009G055300 Sobic006G230200 Sobic006G230200 Sobic009G055300--Sobic006G230200 Sobic006G230100 Sobic006G230100 Sobic009G055300--Sobic006G230100 Sobic008G105800 Sobic008G105800 Sobic009G055300--Sobic008G105800 Sobic002G063700 Sobic002G063700 Sobic009G055300--Sobic002G063700 Sobic001G415100 Sobic001G415100 Sobic009G055300--Sobic001G415100 Sobic007G202480 Sobic007G202480 Sobic009G055300--Sobic007G202480 Sobic004G299500 Sobic004G299500 Sobic009G055300--Sobic004G299500 Sobic005G069332 Sobic005G069332 Sobic009G055300--Sobic005G069332 Sobic005G069166 Sobic005G069166 Sobic009G055300--Sobic005G069166 Sobic006G230200--Sobic009G055300 Sobic001G395900 Sobic001G395900 Sobic006G230200--Sobic001G395900 Sobic006G230200--Sobic006G230100 Sobic006G230200--Sobic007G202480 Sobic006G230200--Sobic004G299500 Sobic006G230200--Sobic005G069332 Sobic006G230200--Sobic008G105800 Sobic001G153100 Sobic001G153100 Sobic006G230200--Sobic001G153100 Sobic006G230200--Sobic005G069166 Sobic006G230100--Sobic004G299500 Sobic006G230100--Sobic001G395900 Sobic006G230100--Sobic007G202480 Sobic007G015000 Sobic007G015000 Sobic006G230100--Sobic007G015000 Sobic006G230100--Sobic005G069166 Sobic006G230100--Sobic009G055300 Sobic006G230100--Sobic006G230200 Sobic006G230100--Sobic001G153100 Sobic006G229901 Sobic006G229901 Sobic006G230100--Sobic006G229901 Sobic008G105800--Sobic009G055300 Sobic008G105800--Sobic005G069332 Sobic008G105800--Sobic005G069166 Sobic008G105800--Sobic007G202480 Sobic008G105800--Sobic006G230100 Sobic005G216400 Sobic005G216400 Sobic008G105800--Sobic005G216400 Sobic006G121000 Sobic006G121000 Sobic008G105800--Sobic006G121000 Sobic008G105800--Sobic004G299500 Sobic008G105800--Sobic006G230200 Sobic002G063700--Sobic009G055300 Sobic002G063700--Sobic001G153100 Sobic002G063700--Sobic001G415100 Sobic002G063700--Sobic005G069332 Sobic009G136800 Sobic009G136800 Sobic002G063700--Sobic009G136800 Sobic002G063700--Sobic005G069166 Sobic002G063700--Sobic006G230100 Sobic002G063700--Sobic006G230200 Sobic010G128300 Sobic010G128300 Sobic002G063700--Sobic010G128300 Sobic001G415100--Sobic007G015000 Sobic002G289500 Sobic002G289500 Sobic001G415100--Sobic002G289500 Sobic001G415100--Sobic006G230100 Sobic001G415100--Sobic009G055300 Sobic001G415100--Sobic002G063700 Sobic001G415100--Sobic004G299500 Sobic005G182900 Sobic005G182900 Sobic001G415100--Sobic005G182900 Sobic001G415100--Sobic001G153100 Sobic005G097900 Sobic005G097900 Sobic001G415100--Sobic005G097900 Sobic007G202480--Sobic001G395900 Sobic007G202480--Sobic006G229901 Sobic007G202480--Sobic004G299500 Sobic007G202480--Sobic006G230100 Sobic007G202480--Sobic005G069166 Sobic007G202480--Sobic001G153100 Sobic007G202480--Sobic006G230200 Sobic007G202480--Sobic005G069332 Sobic007G202480--Sobic008G105800 Sobic004G299500--Sobic006G230100 Sobic004G299500--Sobic001G395900 Sobic004G299500--Sobic007G202480 Sobic004G299500--Sobic005G069166 Sobic004G299500--Sobic006G229901 Sobic004G299500--Sobic007G015000 Sobic004G299500--Sobic005G069332 Sobic004G299500--Sobic001G153100 Sobic008G058600 Sobic008G058600 Sobic004G299500--Sobic008G058600 Sobic005G069332--Sobic005G069166 Sobic005G069332--Sobic004G299500 Sobic005G069332--Sobic008G105800 Sobic005G069332--Sobic006G230100 Sobic005G069332--Sobic007G202480 Sobic005G069332--Sobic002G063700 Sobic005G069332--Sobic009G055300 Sobic005G069332--Sobic001G395900 Sobic005G069332--Sobic006G230200 Sobic005G069166--Sobic004G299500 Sobic005G069166--Sobic005G069332 Sobic005G069166--Sobic006G230100 Sobic005G069166--Sobic007G202480 Sobic005G069166--Sobic001G153100 Sobic005G069166--Sobic006G229901 Sobic005G069166--Sobic008G105800 Sobic005G069166--Sobic001G395900 Sobic005G069166--Sobic007G015000
Octagon: transcription factors


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