Gene annotation
Transcriptome id Sobic.007G223600.1
Synonym Sb07g028890
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
methyladenine glycosylase, putative, expressed
UniProt C5YJN6
Pfam PF03352
Panther DB PTHR31116 PTHR31116:SF2
NCBI CDD -
KEGG Orthology K01246; DNA-3-methyladenine glycosylase I
Gene Ontology GO:0008725; DNA-3-methyladenine glycosylase activity GO:0006284base-excision repair


Orthologs (automatic annotation)
TAIR AT1G13635 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os08g38170.1 : methyladenine glycosylase, putative, expressed
MaizeGDB (Corn) Zm00025a004965
Brachypodium KQJ98761
Barley HORVU3Hr1G087420.2 , HORVU3Hr1G087420.3 , HORVU3Hr1G087420.1 , HORVU3Hr1G087420.6 , HORVU3Hr1G087420.4 , HORVU3Hr1G087420.5
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G164600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule-associated protein, putative, expressed -
2 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
4 Sobic.003G236701 - -
5 Sobic.003G296400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CESA4 - cellulose synthase, expressed K10999: cellulose synthase A
6 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
7 Sobic.006G066500 expressed protein -
8 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
9 Sobic.008G059800 expressed protein -
10 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
12 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
13 Sobic.001G406700 expressed protein -
14 Sobic.006G209300 transferase family domain containing protein, expressed -
15 Sobic.003G112200 Cupin domain containing protein, expressed -
16 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
17 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
18 Sobic.009G048000 villin, putative, expressed K08017: advillin
19 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
20 Sobic.006G036400 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic007G223600 Sobic007G223600 Sobic002G164600 Sobic002G164600 Sobic007G223600--Sobic002G164600 Sobic002G205500 Sobic002G205500 Sobic007G223600--Sobic002G205500 Sobic006G226200 Sobic006G226200 Sobic007G223600--Sobic006G226200 Sobic003G236701 Sobic003G236701 Sobic007G223600--Sobic003G236701 Sobic003G296400 Sobic003G296400 Sobic007G223600--Sobic003G296400 Sobic005G229100 Sobic005G229100 Sobic007G223600--Sobic005G229100 Sobic006G066500 Sobic006G066500 Sobic007G223600--Sobic006G066500 Sobic001G224300 Sobic001G224300 Sobic007G223600--Sobic001G224300 Sobic008G059800 Sobic008G059800 Sobic007G223600--Sobic008G059800 Sobic002G164600--Sobic003G236701 Sobic002G164600--Sobic007G223600 Sobic002G164600--Sobic008G059800 Sobic002G164600--Sobic006G226200 Sobic003G112200 Sobic003G112200 Sobic002G164600--Sobic003G112200 Sobic002G164600--Sobic006G066500 Sobic006G209300 Sobic006G209300 Sobic002G164600--Sobic006G209300 Sobic009G241600 Sobic009G241600 Sobic002G164600--Sobic009G241600 Sobic002G164600--Sobic005G229100 Sobic002G205500--Sobic003G296400 Sobic002G205500--Sobic001G224300 Sobic002G205500--Sobic007G223600 Sobic002G205500--Sobic006G226200 Sobic002G205500--Sobic005G229100 Sobic003G387500 Sobic003G387500 Sobic002G205500--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic002G205500--Sobic009G048000 Sobic006G036400 Sobic006G036400 Sobic002G205500--Sobic006G036400 Sobic009G226900 Sobic009G226900 Sobic002G205500--Sobic009G226900 Sobic006G226200--Sobic003G236701 Sobic006G226200--Sobic006G066500 Sobic006G226200--Sobic007G223600 Sobic006G226200--Sobic003G112200 Sobic006G226200--Sobic002G164600 Sobic006G226200--Sobic003G296400 Sobic006G226200--Sobic009G048000 Sobic003G231500 Sobic003G231500 Sobic006G226200--Sobic003G231500 Sobic006G226200--Sobic002G205500 Sobic003G236701--Sobic006G066500 Sobic003G236701--Sobic002G164600 Sobic003G236701--Sobic009G241600 Sobic003G236701--Sobic006G226200 Sobic003G236701--Sobic003G112200 Sobic003G236701--Sobic007G223600 Sobic003G236701--Sobic008G059800 Sobic003G236701--Sobic003G231500 Sobic001G238600 Sobic001G238600 Sobic003G236701--Sobic001G238600 Sobic003G296400--Sobic002G205500 Sobic003G296400--Sobic001G224300 Sobic003G296400--Sobic006G036400 Sobic003G296400--Sobic007G223600 Sobic003G296400--Sobic006G226200 Sobic003G296400--Sobic009G226900 Sobic003G296400--Sobic009G048000 Sobic004G221300 Sobic004G221300 Sobic003G296400--Sobic004G221300 Sobic003G296400--Sobic003G236701 Sobic005G229100--Sobic007G223600 Sobic010G232500 Sobic010G232500 Sobic005G229100--Sobic010G232500 Sobic005G229100--Sobic002G205500 Sobic006G144600 Sobic006G144600 Sobic005G229100--Sobic006G144600 Sobic001G406700 Sobic001G406700 Sobic005G229100--Sobic001G406700 Sobic005G229100--Sobic002G164600 Sobic005G229100--Sobic006G226200 Sobic005G229100--Sobic003G387500 Sobic001G399200 Sobic001G399200 Sobic005G229100--Sobic001G399200 Sobic006G066500--Sobic003G236701 Sobic001G422300 Sobic001G422300 Sobic006G066500--Sobic001G422300 Sobic006G066500--Sobic006G226200 Sobic006G066500--Sobic003G112200 Sobic004G125400 Sobic004G125400 Sobic006G066500--Sobic004G125400 Sobic006G066500--Sobic001G238600 Sobic006G066500--Sobic003G231500 Sobic003G220000 Sobic003G220000 Sobic006G066500--Sobic003G220000 Sobic008G010400 Sobic008G010400 Sobic006G066500--Sobic008G010400 Sobic001G224300--Sobic003G296400 Sobic001G224300--Sobic002G205500 Sobic001G224300--Sobic006G036400 Sobic001G224300--Sobic003G387500 Sobic001G224300--Sobic009G226900 Sobic001G224300--Sobic007G223600 Sobic009G034300 Sobic009G034300 Sobic001G224300--Sobic009G034300 Sobic001G224300--Sobic004G221300 Sobic001G409100 Sobic001G409100 Sobic001G224300--Sobic001G409100 Sobic008G059800--Sobic002G164600 Sobic008G059800--Sobic003G236701 Sobic008G059800--Sobic009G241600 Sobic009G153800 Sobic009G153800 Sobic008G059800--Sobic009G153800 Sobic010G199700 Sobic010G199700 Sobic008G059800--Sobic010G199700 Sobic008G059800--Sobic007G223600 Sobic008G112200 Sobic008G112200 Sobic008G059800--Sobic008G112200 Sobic008G059800--Sobic009G226900 Sobic008G059800--Sobic006G066500
Octagon: transcription factors


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