Gene annotation
Transcriptome id Sobic.007G200600.1
Synonym Sb07g026820, SE
Functional annotation ZOS8-11 - C2H2 zinc finger protein, expressed
UniProt C5YI88
Pfam PF12066 PF04959
Panther DB PTHR13165 PTHR13165:SF2
NCBI CDD KOG2295; C2H2 Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27100 : C2H2 zinc-finger protein SERRATE (SE)
RAP-DB (Rice) LOC_Os08g40560.1 : ZOS8-11 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a005180 , Zm00025a030355
Brachypodium KQK17364 , KQJ99031 , KQJ99032 , KQK17363
Barley HORVU7Hr1G052570.4 , HORVU7Hr1G052570.2 , HORVU7Hr1G052570.3 , HORVU7Hr1G052570.1
Wheat TraesCS7B02G150500 , TraesCS7D02G252800 , TraesCS7D02G252800 , TraesCS7A02G254300
Populus -


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cDNA sequences
Sobic.007G200600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G104800 expressed protein -
2 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
3 Sobic.001G497300 protein kinase domain containing protein, expressed -
4 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
5 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
6 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
7 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
8 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
9 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
10 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
11 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
12 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
13 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
14 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
15 Sobic.004G205600 bromodomain domain containing protein, expressed -
16 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
17 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
18 Sobic.002G248400 ENT domain containing protein, expressed -
19 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
20 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1


Gene co-expression network
sample Sobic007G200600 Sobic007G200600 Sobic007G104800 Sobic007G104800 Sobic007G200600--Sobic007G104800 Sobic001G119300 Sobic001G119300 Sobic007G200600--Sobic001G119300 Sobic001G497300 Sobic001G497300 Sobic007G200600--Sobic001G497300 Sobic007G026300 Sobic007G026300 Sobic007G200600--Sobic007G026300 Sobic003G187400 Sobic003G187400 Sobic007G200600--Sobic003G187400 Sobic004G021100 Sobic004G021100 Sobic007G200600--Sobic004G021100 Sobic001G512700 Sobic001G512700 Sobic007G200600--Sobic001G512700 Sobic007G132400 Sobic007G132400 Sobic007G200600--Sobic007G132400 Sobic004G084300 Sobic004G084300 Sobic007G200600--Sobic004G084300 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic007G104800--Sobic001G119300 Sobic007G104800--Sobic003G187400 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic007G104800--Sobic004G205600 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500 Sobic001G119300--Sobic007G104800 Sobic001G119300--Sobic007G200600 Sobic001G119300--Sobic007G026300 Sobic002G350300 Sobic002G350300 Sobic001G119300--Sobic002G350300 Sobic006G088100 Sobic006G088100 Sobic001G119300--Sobic006G088100 Sobic009G205200 Sobic009G205200 Sobic001G119300--Sobic009G205200 Sobic002G200100 Sobic002G200100 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800 Sobic001G497300--Sobic007G104800 Sobic001G497300--Sobic001G512700 Sobic002G006900 Sobic002G006900 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic008G047800 Sobic008G047800 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic002G157000 Sobic002G157000 Sobic001G497300--Sobic002G157000 Sobic007G026300--Sobic004G021100 Sobic007G026300--Sobic004G205600 Sobic007G026300--Sobic001G512700 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic007G026300--Sobic001G497300 Sobic007G026300--Sobic007G200600 Sobic001G090400 Sobic001G090400 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic002G157300 Sobic002G157300 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic009G040700 Sobic009G040700 Sobic003G187400--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G187400--Sobic001G094000 Sobic006G173100 Sobic006G173100 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic003G187400--Sobic007G104800 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic001G512700--Sobic008G047800 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G512700--Sobic001G497300 Sobic001G512700--Sobic007G118600 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic007G132400--Sobic004G084300 Sobic003G241200 Sobic003G241200 Sobic007G132400--Sobic003G241200 Sobic007G132400--Sobic008G067600 Sobic007G132400--Sobic007G104800 Sobic003G220200 Sobic003G220200 Sobic007G132400--Sobic003G220200 Sobic007G132400--Sobic001G107500 Sobic003G081000 Sobic003G081000 Sobic007G132400--Sobic003G081000 Sobic002G320500 Sobic002G320500 Sobic007G132400--Sobic002G320500 Sobic002G310200 Sobic002G310200 Sobic007G132400--Sobic002G310200 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic004G084300--Sobic003G241200 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic004G084300--Sobic007G132400
Octagon: transcription factors


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