Gene annotation
Transcriptome id Sobic.006G267500.1,Sobic.006G267500.2
Synonym
Functional annotation katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
UniProt A0A1Z5RFL9 , A0A1B6PP41
Pfam PF00400 PF13925
Panther DB PTHR19845 PTHR19845:SF0
NCBI CDD KOG0267; Microtubule severing protein katanin p80 subunit B (contains WD40 repeats)
KEGG Orthology K18643; katanin p80 WD40 repeat-containing subunit B1
Gene Ontology GO:0005515; protein binding GO:0008352katanin complex GO:0008017microtubule binding


Orthologs (automatic annotation)
TAIR AT1G61210 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os04g58130.1 : katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
MaizeGDB (Corn) Zm00025a057385 , Zm00025a009290
Brachypodium KQJ85297 , KQJ85298 , KQJ85299 , KQJ85294 , KQJ85295 , KQJ85296 , KQJ85290 , KQJ85291 , KQJ85292 , KQJ85293
Barley -
Wheat TraesCS2A02G592600 , TraesCS2D02G561900 , TraesCS2D02G561900 , TraesCS2B02G591600 , TraesCS2B02G591600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G061000 DNA binding protein, putative, expressed -
2 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
3 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
4 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
5 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -
6 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
7 Sobic.010G090500 expressed protein -
8 Sobic.005G204700 polygalacturonase, putative, expressed -
9 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
10 Sobic.009G151700 protein of unknown function DUF502 domain containing protein, expressed -
11 Sobic.002G276600 endoglucanase, putative, expressed -
12 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
13 Sobic.007G139500 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
14 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
15 Sobic.001G196000 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
16 Sobic.010G042600 transporter family protein, putative, expressed K15280: solute carrier family 35, member C2
17 Sobic.010G067800 integral membrane transporter family protein, putative, expressed -
18 Sobic.001G361200 expressed protein -
19 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
20 Sobic.007G084200 expressed protein -


Gene co-expression network
sample Sobic006G267500 Sobic006G267500 Sobic009G061000 Sobic009G061000 Sobic006G267500--Sobic009G061000 Sobic009G206500 Sobic009G206500 Sobic006G267500--Sobic009G206500 Sobic009G212100 Sobic009G212100 Sobic006G267500--Sobic009G212100 Sobic006G254500 Sobic006G254500 Sobic006G267500--Sobic006G254500 Sobic001G437500 Sobic001G437500 Sobic006G267500--Sobic001G437500 Sobic004G315700 Sobic004G315700 Sobic006G267500--Sobic004G315700 Sobic010G090500 Sobic010G090500 Sobic006G267500--Sobic010G090500 Sobic005G204700 Sobic005G204700 Sobic006G267500--Sobic005G204700 Sobic001G296800 Sobic001G296800 Sobic006G267500--Sobic001G296800 Sobic009G061000--Sobic006G267500 Sobic009G073400 Sobic009G073400 Sobic009G061000--Sobic009G073400 Sobic009G061000--Sobic001G437500 Sobic002G276600 Sobic002G276600 Sobic009G061000--Sobic002G276600 Sobic001G159800 Sobic001G159800 Sobic009G061000--Sobic001G159800 Sobic009G061000--Sobic010G090500 Sobic009G061000--Sobic009G206500 Sobic009G167100 Sobic009G167100 Sobic009G061000--Sobic009G167100 Sobic001G051300 Sobic001G051300 Sobic009G061000--Sobic001G051300 Sobic007G139500 Sobic007G139500 Sobic009G206500--Sobic007G139500 Sobic010G067800 Sobic010G067800 Sobic009G206500--Sobic010G067800 Sobic009G206500--Sobic006G267500 Sobic009G206500--Sobic001G437500 Sobic001G144200 Sobic001G144200 Sobic009G206500--Sobic001G144200 Sobic007G040301 Sobic007G040301 Sobic009G206500--Sobic007G040301 Sobic002G275500 Sobic002G275500 Sobic009G206500--Sobic002G275500 Sobic009G026101 Sobic009G026101 Sobic009G206500--Sobic009G026101 Sobic001G183600 Sobic001G183600 Sobic009G206500--Sobic001G183600 Sobic001G487200 Sobic001G487200 Sobic009G212100--Sobic001G487200 Sobic009G212100--Sobic004G315700 Sobic009G212100--Sobic001G296800 Sobic003G226700 Sobic003G226700 Sobic009G212100--Sobic003G226700 Sobic007G084200 Sobic007G084200 Sobic009G212100--Sobic007G084200 Sobic009G212100--Sobic006G267500 Sobic006G084300 Sobic006G084300 Sobic009G212100--Sobic006G084300 Sobic001G369800 Sobic001G369800 Sobic009G212100--Sobic001G369800 Sobic009G212100--Sobic006G254500 Sobic006G254500--Sobic006G267500 Sobic006G254500--Sobic009G212100 Sobic006G254500--Sobic004G315700 Sobic002G393200 Sobic002G393200 Sobic006G254500--Sobic002G393200 Sobic007G166800 Sobic007G166800 Sobic006G254500--Sobic007G166800 Sobic001G285200 Sobic001G285200 Sobic006G254500--Sobic001G285200 Sobic003G077500 Sobic003G077500 Sobic006G254500--Sobic003G077500 Sobic006G254500--Sobic001G487200 Sobic006G254500--Sobic009G206500 Sobic001G196000 Sobic001G196000 Sobic001G437500--Sobic001G196000 Sobic004G243800 Sobic004G243800 Sobic001G437500--Sobic004G243800 Sobic004G274800 Sobic004G274800 Sobic001G437500--Sobic004G274800 Sobic001G437500--Sobic009G206500 Sobic001G437500--Sobic007G139500 Sobic001G437500--Sobic001G159800 Sobic001G437500--Sobic009G061000 Sobic001G437500--Sobic006G267500 Sobic001G437500--Sobic002G276600 Sobic004G315700--Sobic001G487200 Sobic004G315700--Sobic009G212100 Sobic004G315700--Sobic001G296800 Sobic009G052100 Sobic009G052100 Sobic004G315700--Sobic009G052100 Sobic004G315700--Sobic006G084300 Sobic003G420300 Sobic003G420300 Sobic004G315700--Sobic003G420300 Sobic006G218900 Sobic006G218900 Sobic004G315700--Sobic006G218900 Sobic003G345000 Sobic003G345000 Sobic004G315700--Sobic003G345000 Sobic001G540700 Sobic001G540700 Sobic004G315700--Sobic001G540700 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic010G090500--Sobic001G437500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic010G090500--Sobic009G061000 Sobic009G125900 Sobic009G125900 Sobic010G090500--Sobic009G125900 Sobic005G204700--Sobic006G267500 Sobic005G204700--Sobic002G393200 Sobic005G204700--Sobic009G206500 Sobic004G249100 Sobic004G249100 Sobic005G204700--Sobic004G249100 Sobic001G116000 Sobic001G116000 Sobic005G204700--Sobic001G116000 Sobic005G204700--Sobic010G090500 Sobic004G051300 Sobic004G051300 Sobic005G204700--Sobic004G051300 Sobic010G042600 Sobic010G042600 Sobic005G204700--Sobic010G042600 Sobic003G151300 Sobic003G151300 Sobic005G204700--Sobic003G151300 Sobic001G296800--Sobic009G212100 Sobic001G296800--Sobic004G315700 Sobic010G103500 Sobic010G103500 Sobic001G296800--Sobic010G103500 Sobic001G296800--Sobic001G487200 Sobic004G129500 Sobic004G129500 Sobic001G296800--Sobic004G129500 Sobic001G361200 Sobic001G361200 Sobic001G296800--Sobic001G361200 Sobic002G370400 Sobic002G370400 Sobic001G296800--Sobic002G370400 Sobic001G212600 Sobic001G212600 Sobic001G296800--Sobic001G212600 Sobic001G296800--Sobic009G052100
Octagon: transcription factors


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