Gene annotation
Transcriptome id Sobic.007G084200.1,Sobic.007G084200.2
Synonym Sb07g006900
Functional annotation expressed protein
UniProt A0A1B6PGF4
Pfam -
Panther DB PTHR33709 PTHR33709:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16860 : Ubiquitin-specific protease family C19-related protein
RAP-DB (Rice) LOC_Os08g13350.1 : expressed protein
MaizeGDB (Corn) Zm00025a056969 , Zm00025a054944 , Zm00025a030895
Brachypodium PNT66914 , KQJ95671 , KQJ95670 , KQJ95668 , KQJ95669 , KQJ95684 , KQJ95685
Barley HORVU2Hr1G100660.5 , HORVU2Hr1G100660.3 , HORVU2Hr1G100660.2 , HORVU2Hr1G100660.1 , HORVU7Hr1G061070.3 , HORVU7Hr1G061070.2 , HORVU7Hr1G061070.11 , HORVU7Hr1G061070.10 , HORVU7Hr1G061070.5 , HORVU7Hr1G061070.4 , HORVU7Hr1G061070.7 , HORVU7Hr1G061070.6 , HORVU7Hr1G061070.1 , HORVU7Hr1G061070.9 , HORVU7Hr1G061070.8
Wheat TraesCS7D02G282000 , TraesCS7D02G282000 , TraesCS7D02G282000 , TraesCS7D02G282000 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS7A02G283600 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900 , TraesCS7B02G176900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G084200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G226700 kinesin motor domain containing protein, putative, expressed K10393: KIF2_24, kinesin family member 2/24
2 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
3 Sobic.003G420300 zinc finger protein, putative, expressed -
4 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
5 Sobic.003G345000 CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
6 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
7 Sobic.006G218900 TKL_IRAK_CrRLK1L-1.9 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
8 Sobic.001G369800 monocopper oxidase, putative, expressed -
9 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
10 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
11 Sobic.005G055600 myosin heavy chain-related, putative, expressed -
12 Sobic.010G067600 expressed protein K16586: HAUS augmin-like complex subunit 3
13 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
14 Sobic.008G096200 AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
15 Sobic.003G389100 formin-like protein 1 precursor, putative, expressed -
16 Sobic.008G070700 leafbladeless1, putative, expressed -
17 Sobic.002G351700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
18 Sobic.006G267800 WD-40 repeat family protein, putative, expressed -
19 Sobic.006G267500 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
20 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4


Gene co-expression network
sample Sobic007G084200 Sobic007G084200 Sobic003G226700 Sobic003G226700 Sobic007G084200--Sobic003G226700 Sobic009G212100 Sobic009G212100 Sobic007G084200--Sobic009G212100 Sobic003G420300 Sobic003G420300 Sobic007G084200--Sobic003G420300 Sobic001G487200 Sobic001G487200 Sobic007G084200--Sobic001G487200 Sobic003G345000 Sobic003G345000 Sobic007G084200--Sobic003G345000 Sobic003G292700 Sobic003G292700 Sobic007G084200--Sobic003G292700 Sobic006G218900 Sobic006G218900 Sobic007G084200--Sobic006G218900 Sobic001G369800 Sobic001G369800 Sobic007G084200--Sobic001G369800 Sobic004G315700 Sobic004G315700 Sobic007G084200--Sobic004G315700 Sobic003G226700--Sobic007G084200 Sobic003G226700--Sobic003G420300 Sobic003G226700--Sobic003G292700 Sobic001G425700 Sobic001G425700 Sobic003G226700--Sobic001G425700 Sobic003G289800 Sobic003G289800 Sobic003G226700--Sobic003G289800 Sobic003G226700--Sobic009G212100 Sobic003G226700--Sobic001G487200 Sobic003G226700--Sobic004G315700 Sobic003G024000 Sobic003G024000 Sobic003G226700--Sobic003G024000 Sobic009G212100--Sobic001G487200 Sobic009G212100--Sobic004G315700 Sobic001G296800 Sobic001G296800 Sobic009G212100--Sobic001G296800 Sobic009G212100--Sobic003G226700 Sobic009G212100--Sobic007G084200 Sobic006G267500 Sobic006G267500 Sobic009G212100--Sobic006G267500 Sobic006G084300 Sobic006G084300 Sobic009G212100--Sobic006G084300 Sobic009G212100--Sobic001G369800 Sobic006G254500 Sobic006G254500 Sobic009G212100--Sobic006G254500 Sobic003G420300--Sobic003G292700 Sobic003G420300--Sobic003G226700 Sobic008G083500 Sobic008G083500 Sobic003G420300--Sobic008G083500 Sobic010G067600 Sobic010G067600 Sobic003G420300--Sobic010G067600 Sobic003G420300--Sobic003G289800 Sobic003G420300--Sobic004G315700 Sobic002G320600 Sobic002G320600 Sobic003G420300--Sobic002G320600 Sobic003G420300--Sobic007G084200 Sobic009G052100 Sobic009G052100 Sobic003G420300--Sobic009G052100 Sobic001G487200--Sobic004G315700 Sobic001G487200--Sobic009G212100 Sobic001G487200--Sobic001G369800 Sobic001G231200 Sobic001G231200 Sobic001G487200--Sobic001G231200 Sobic002G370400 Sobic002G370400 Sobic001G487200--Sobic002G370400 Sobic001G487200--Sobic003G226700 Sobic001G540700 Sobic001G540700 Sobic001G487200--Sobic001G540700 Sobic001G487200--Sobic001G296800 Sobic001G487200--Sobic007G084200 Sobic003G283600 Sobic003G283600 Sobic003G345000--Sobic003G283600 Sobic003G345000--Sobic004G315700 Sobic003G345000--Sobic001G540700 Sobic003G345000--Sobic006G218900 Sobic003G345000--Sobic003G420300 Sobic003G345000--Sobic007G084200 Sobic009G225500 Sobic009G225500 Sobic003G345000--Sobic009G225500 Sobic003G345000--Sobic009G212100 Sobic003G345000--Sobic003G292700 Sobic003G292700--Sobic003G420300 Sobic003G292700--Sobic003G226700 Sobic009G202801 Sobic009G202801 Sobic003G292700--Sobic009G202801 Sobic001G054700 Sobic001G054700 Sobic003G292700--Sobic001G054700 Sobic006G142500 Sobic006G142500 Sobic003G292700--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic003G292700--Sobic003G032200 Sobic001G377700 Sobic001G377700 Sobic003G292700--Sobic001G377700 Sobic002G021200 Sobic002G021200 Sobic003G292700--Sobic002G021200 Sobic003G292700--Sobic008G083500 Sobic006G218900--Sobic004G315700 Sobic006G218900--Sobic001G369800 Sobic006G218900--Sobic003G226700 Sobic006G218900--Sobic001G540700 Sobic002G253900 Sobic002G253900 Sobic006G218900--Sobic002G253900 Sobic006G218900--Sobic003G345000 Sobic006G218900--Sobic001G487200 Sobic002G284100 Sobic002G284100 Sobic006G218900--Sobic002G284100 Sobic006G218900--Sobic007G084200 Sobic001G369800--Sobic002G284100 Sobic001G369800--Sobic001G487200 Sobic001G123100 Sobic001G123100 Sobic001G369800--Sobic001G123100 Sobic001G369800--Sobic001G540700 Sobic001G369800--Sobic006G218900 Sobic001G369800--Sobic009G212100 Sobic001G369800--Sobic003G283600 Sobic003G351900 Sobic003G351900 Sobic001G369800--Sobic003G351900 Sobic001G212600 Sobic001G212600 Sobic001G369800--Sobic001G212600 Sobic004G315700--Sobic001G487200 Sobic004G315700--Sobic009G212100 Sobic004G315700--Sobic001G296800 Sobic004G315700--Sobic009G052100 Sobic004G315700--Sobic006G084300 Sobic004G315700--Sobic003G420300 Sobic004G315700--Sobic006G218900 Sobic004G315700--Sobic003G345000 Sobic004G315700--Sobic001G540700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.