Gene annotation
Transcriptome id Sobic.004G265900.1
Synonym Sb04g030390, CARA
Functional annotation class I glutamine amidotransferase, putative, expressed
UniProt C5Y0A2
Pfam PF00117 PF00988
Panther DB PTHR11405 PTHR11405:SF37
NCBI CDD -
KEGG Orthology K01956; carA, carbamoyl-phosphate synthase small subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27740 : carbamoyl phosphate synthetase A
RAP-DB (Rice) LOC_Os02g47850.2 : class I glutamine amidotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a021744 , Zm00025a032477
Brachypodium KQJ93560
Barley HORVU5Hr1G048890.1 , HORVU5Hr1G048890.2 , HORVU5Hr1G048890.3 , HORVU5Hr1G048890.4
Wheat TraesCS5D02G161500 , TraesCS5B02G154400 , TraesCS5A02G156200 , TraesCS5A02G156200 , TraesCS5B02G154400 , TraesCS5D02G161500 , TraesCS5B02G154400 , TraesCS5D02G161500
Populus -


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cDNA sequences
Sobic.004G265900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G094700 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
2 Sobic.004G144000 - -
3 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.008G089500 Fe-S metabolism associated domain containing protein, expressed K03517: quinolinate synthase
5 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
6 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
7 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -
8 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
9 Sobic.008G193300 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@"OsSUT2(Ortholog in rice:Eom et al., 2011)"(PubMedID : 31659914)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
10 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
11 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
12 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
13 Sobic.003G084500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
14 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
15 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
16 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
17 Sobic.006G091300 glutathione S-transferase, N-terminal domain containing protein, expressed K03354: anaphase-promoting complex subunit 7
18 Sobic.004G333400 COBW domain containing protein, putative, expressed -
19 Sobic.003G334100 zinc finger family protein, putative, expressed -
20 Sobic.002G056800 YGGT family protein, putative, expressed -


Gene co-expression network
sample Sobic004G265900 Sobic004G265900 Sobic009G094700 Sobic009G094700 Sobic004G265900--Sobic009G094700 Sobic004G144000 Sobic004G144000 Sobic004G265900--Sobic004G144000 Sobic003G310100 Sobic003G310100 Sobic004G265900--Sobic003G310100 Sobic008G089500 Sobic008G089500 Sobic004G265900--Sobic008G089500 Sobic003G444500 Sobic003G444500 Sobic004G265900--Sobic003G444500 Sobic003G330100 Sobic003G330100 Sobic004G265900--Sobic003G330100 Sobic005G028900 Sobic005G028900 Sobic004G265900--Sobic005G028900 Sobic010G183400 Sobic010G183400 Sobic004G265900--Sobic010G183400 Sobic008G193300 Sobic008G193300 Sobic004G265900--Sobic008G193300 Sobic009G094700--Sobic004G265900 Sobic009G036300 Sobic009G036300 Sobic009G094700--Sobic009G036300 Sobic009G094700--Sobic008G089500 Sobic009G094700--Sobic004G144000 Sobic009G094700--Sobic003G444500 Sobic009G094700--Sobic003G310100 Sobic009G094700--Sobic005G028900 Sobic003G286300 Sobic003G286300 Sobic009G094700--Sobic003G286300 Sobic010G086900 Sobic010G086900 Sobic009G094700--Sobic010G086900 Sobic004G144000--Sobic005G028900 Sobic003G334100 Sobic003G334100 Sobic004G144000--Sobic003G334100 Sobic004G250200 Sobic004G250200 Sobic004G144000--Sobic004G250200 Sobic004G333400 Sobic004G333400 Sobic004G144000--Sobic004G333400 Sobic004G144000--Sobic010G183400 Sobic003G084500 Sobic003G084500 Sobic004G144000--Sobic003G084500 Sobic004G144000--Sobic003G444500 Sobic002G181000 Sobic002G181000 Sobic004G144000--Sobic002G181000 Sobic004G144000--Sobic004G265900 Sobic001G424300 Sobic001G424300 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic001G437200 Sobic001G437200 Sobic003G310100--Sobic001G437200 Sobic001G281500 Sobic001G281500 Sobic003G310100--Sobic001G281500 Sobic006G237100 Sobic006G237100 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600 Sobic005G002900 Sobic005G002900 Sobic008G089500--Sobic005G002900 Sobic001G495200 Sobic001G495200 Sobic008G089500--Sobic001G495200 Sobic001G283700 Sobic001G283700 Sobic008G089500--Sobic001G283700 Sobic008G089500--Sobic004G333400 Sobic004G179200 Sobic004G179200 Sobic008G089500--Sobic004G179200 Sobic008G089500--Sobic003G334100 Sobic001G025400 Sobic001G025400 Sobic008G089500--Sobic001G025400 Sobic008G089500--Sobic003G286300 Sobic008G089500--Sobic002G181000 Sobic001G148200 Sobic001G148200 Sobic003G444500--Sobic001G148200 Sobic003G444500--Sobic003G330100 Sobic003G444500--Sobic004G179200 Sobic002G251400 Sobic002G251400 Sobic003G444500--Sobic002G251400 Sobic009G042200 Sobic009G042200 Sobic003G444500--Sobic009G042200 Sobic003G221700 Sobic003G221700 Sobic003G444500--Sobic003G221700 Sobic003G444500--Sobic003G084500 Sobic002G131700 Sobic002G131700 Sobic003G444500--Sobic002G131700 Sobic003G444500--Sobic004G250200 Sobic003G330100--Sobic006G111600 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic009G234200 Sobic009G234200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200 Sobic006G214700 Sobic006G214700 Sobic005G028900--Sobic006G214700 Sobic005G028900--Sobic004G144000 Sobic005G028900--Sobic010G183400 Sobic005G028900--Sobic004G250200 Sobic003G439600 Sobic003G439600 Sobic005G028900--Sobic003G439600 Sobic003G245800 Sobic003G245800 Sobic005G028900--Sobic003G245800 Sobic003G179400 Sobic003G179400 Sobic005G028900--Sobic003G179400 Sobic007G227600 Sobic007G227600 Sobic005G028900--Sobic007G227600 Sobic005G028900--Sobic004G333400 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic001G450600 Sobic001G450600 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic010G183400--Sobic005G028900 Sobic008G063200 Sobic008G063200 Sobic008G193300--Sobic008G063200 Sobic010G080300 Sobic010G080300 Sobic008G193300--Sobic010G080300 Sobic002G404200 Sobic002G404200 Sobic008G193300--Sobic002G404200 Sobic008G193300--Sobic004G265900 Sobic008G193300--Sobic006G214700 Sobic008G193300--Sobic001G450600 Sobic009G079950 Sobic009G079950 Sobic008G193300--Sobic009G079950 Sobic002G142066 Sobic002G142066 Sobic008G193300--Sobic002G142066 Sobic008G193300--Sobic004G144000
Octagon: transcription factors


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