Gene annotation
Transcriptome id Sobic.004G225700.1
Synonym Sb04g027000
Functional annotation F-box/LRR-repeat protein 2, putative, expressed
UniProt A0A194YR73
Pfam -
Panther DB PTHR24006 PTHR24006:SF524
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K10268; F-box and leucine-rich repeat protein 2/20
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23340 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os02g42412.1 : F-box/LRR-repeat protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a032090
Brachypodium KQK00477
Barley HORVU6Hr1G059950.1
Wheat TraesCS6D02G216400 , TraesCS6A02G234100 , TraesCS6A02G234100 , TraesCS6B02G262900
Populus -


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cDNA sequences
Sobic.004G225700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G086200 expressed protein -
2 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
3 Sobic.003G077500 expressed protein -
4 Sobic.002G393200 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.009G175200 expressed protein -
6 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
7 Sobic.005G159600 lymphoid organ expressed yellow head virus receptor protein, putative, expressed -
8 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
9 Sobic.004G134100 glycosyltransferase, putative, expressed -
10 Sobic.003G201700 tyrosine protein kinase domain containing protein, putative, expressed -
11 Sobic.003G347300 TBC domain containing protein, expressed -
12 Sobic.002G002100 expressed protein -
13 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
14 Sobic.009G064900 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
15 Sobic.003G375000 RNA recognition motif containing protein, putative, expressed -
16 Sobic.010G105701 - -
17 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
18 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
19 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
20 Sobic.006G267500 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1


Gene co-expression network
sample Sobic004G225700 Sobic004G225700 Sobic008G086200 Sobic008G086200 Sobic004G225700--Sobic008G086200 Sobic002G218700 Sobic002G218700 Sobic004G225700--Sobic002G218700 Sobic003G077500 Sobic003G077500 Sobic004G225700--Sobic003G077500 Sobic002G393200 Sobic002G393200 Sobic004G225700--Sobic002G393200 Sobic009G175200 Sobic009G175200 Sobic004G225700--Sobic009G175200 Sobic001G385400 Sobic001G385400 Sobic004G225700--Sobic001G385400 Sobic005G159600 Sobic005G159600 Sobic004G225700--Sobic005G159600 Sobic006G254500 Sobic006G254500 Sobic004G225700--Sobic006G254500 Sobic004G134100 Sobic004G134100 Sobic004G225700--Sobic004G134100 Sobic008G086200--Sobic004G225700 Sobic008G086200--Sobic009G175200 Sobic003G174900 Sobic003G174900 Sobic008G086200--Sobic003G174900 Sobic003G375000 Sobic003G375000 Sobic008G086200--Sobic003G375000 Sobic009G123500 Sobic009G123500 Sobic008G086200--Sobic009G123500 Sobic008G190500 Sobic008G190500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700 Sobic003G347300 Sobic003G347300 Sobic002G218700--Sobic003G347300 Sobic010G046400 Sobic010G046400 Sobic002G218700--Sobic010G046400 Sobic001G247200 Sobic001G247200 Sobic002G218700--Sobic001G247200 Sobic009G030300 Sobic009G030300 Sobic002G218700--Sobic009G030300 Sobic010G256000 Sobic010G256000 Sobic002G218700--Sobic010G256000 Sobic003G131200 Sobic003G131200 Sobic002G218700--Sobic003G131200 Sobic004G227500 Sobic004G227500 Sobic002G218700--Sobic004G227500 Sobic009G253400 Sobic009G253400 Sobic002G218700--Sobic009G253400 Sobic002G218700--Sobic004G225700 Sobic001G315400 Sobic001G315400 Sobic003G077500--Sobic001G315400 Sobic007G125700 Sobic007G125700 Sobic003G077500--Sobic007G125700 Sobic001G372900 Sobic001G372900 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic002G219900 Sobic002G219900 Sobic003G077500--Sobic002G219900 Sobic003G077500--Sobic006G254500 Sobic001G367100 Sobic001G367100 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic008G148500 Sobic008G148500 Sobic002G393200--Sobic008G148500 Sobic002G393200--Sobic006G254500 Sobic005G204700 Sobic005G204700 Sobic002G393200--Sobic005G204700 Sobic004G152200 Sobic004G152200 Sobic002G393200--Sobic004G152200 Sobic002G161700 Sobic002G161700 Sobic002G393200--Sobic002G161700 Sobic002G393200--Sobic003G131200 Sobic009G206500 Sobic009G206500 Sobic002G393200--Sobic009G206500 Sobic002G143200 Sobic002G143200 Sobic002G393200--Sobic002G143200 Sobic006G267500 Sobic006G267500 Sobic002G393200--Sobic006G267500 Sobic009G175200--Sobic008G086200 Sobic009G175200--Sobic003G174900 Sobic009G099700 Sobic009G099700 Sobic009G175200--Sobic009G099700 Sobic001G361800 Sobic001G361800 Sobic009G175200--Sobic001G361800 Sobic004G247300 Sobic004G247300 Sobic009G175200--Sobic004G247300 Sobic007G210900 Sobic007G210900 Sobic009G175200--Sobic007G210900 Sobic004G154600 Sobic004G154600 Sobic009G175200--Sobic004G154600 Sobic009G175200--Sobic003G375000 Sobic009G175200--Sobic004G225700 Sobic001G143600 Sobic001G143600 Sobic001G385400--Sobic001G143600 Sobic001G385400--Sobic002G143200 Sobic003G435500 Sobic003G435500 Sobic001G385400--Sobic003G435500 Sobic008G015200 Sobic008G015200 Sobic001G385400--Sobic008G015200 Sobic010G250800 Sobic010G250800 Sobic001G385400--Sobic010G250800 Sobic001G507200 Sobic001G507200 Sobic001G385400--Sobic001G507200 Sobic002G002100 Sobic002G002100 Sobic001G385400--Sobic002G002100 Sobic009G167100 Sobic009G167100 Sobic001G385400--Sobic009G167100 Sobic006G140600 Sobic006G140600 Sobic001G385400--Sobic006G140600 Sobic003G277900 Sobic003G277900 Sobic005G159600--Sobic003G277900 Sobic004G053300 Sobic004G053300 Sobic005G159600--Sobic004G053300 Sobic005G159600--Sobic004G134100 Sobic005G159600--Sobic008G086200 Sobic005G159600--Sobic009G123500 Sobic005G159600--Sobic002G393200 Sobic005G159600--Sobic004G225700 Sobic009G026200 Sobic009G026200 Sobic005G159600--Sobic009G026200 Sobic002G168600 Sobic002G168600 Sobic005G159600--Sobic002G168600 Sobic006G254500--Sobic006G267500 Sobic009G212100 Sobic009G212100 Sobic006G254500--Sobic009G212100 Sobic006G254500--Sobic004G315700 Sobic006G254500--Sobic002G393200 Sobic007G166800 Sobic007G166800 Sobic006G254500--Sobic007G166800 Sobic001G285200 Sobic001G285200 Sobic006G254500--Sobic001G285200 Sobic006G254500--Sobic003G077500 Sobic001G487200 Sobic001G487200 Sobic006G254500--Sobic001G487200 Sobic006G254500--Sobic009G206500 Sobic004G134100--Sobic009G026200 Sobic010G242900 Sobic010G242900 Sobic004G134100--Sobic010G242900 Sobic001G069800 Sobic001G069800 Sobic004G134100--Sobic001G069800 Sobic004G006700 Sobic004G006700 Sobic004G134100--Sobic004G006700 Sobic004G134100--Sobic005G159600 Sobic010G138500 Sobic010G138500 Sobic004G134100--Sobic010G138500 Sobic001G215900 Sobic001G215900 Sobic004G134100--Sobic001G215900 Sobic001G366800 Sobic001G366800 Sobic004G134100--Sobic001G366800 Sobic003G151300 Sobic003G151300 Sobic004G134100--Sobic003G151300
Octagon: transcription factors


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