Gene annotation
Transcriptome id Sobic.003G366500.1
Synonym Sb03g040820
Functional annotation transport protein particle component, Bet3, domain containing protein, expressed
UniProt A0A1B6Q753
Pfam PF04051
Panther DB PTHR20902 PTHR20902:SF0
NCBI CDD KOG3315; Transport protein particle (TRAPP) complex subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58030 : Transport protein particle (TRAPP) component
RAP-DB (Rice) LOC_Os01g51220.1 : transport protein particle component, Bet3, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041587
Brachypodium -
Barley HORVU5Hr1G118860.7 , HORVU5Hr1G118860.6 , HORVU5Hr1G118860.5 , HORVU5Hr1G118860.4 , HORVU5Hr1G118860.3 , HORVU5Hr1G118860.2 , HORVU5Hr1G118860.1 , HORVU5Hr1G118860.8
Wheat TraesCS2B02G273700 , TraesCS2B02G273700 , TraesCS2D02G229400 , TraesCS2A02G223400 , TraesCS5B02G523000 , TraesCS5D02G521800 , TraesCS4A02G350000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G153700 expressed protein -
2 Sobic.001G221500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
3 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
4 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
5 Sobic.001G260400 transcription initiation factor, putative, expressed K03136: TFIIE1, GTF2E1, TFA1, transcription initiation factor TFIIE subunit alpha
6 Sobic.007G183700 la domain containing protein, expressed K15191: La-related protein 7
7 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
8 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
9 Sobic.003G181800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
10 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
11 Sobic.002G352600 expressed protein -
12 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
13 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
14 Sobic.002G131900 expressed protein -
15 Sobic.008G050800 expressed protein -
16 Sobic.001G193000 STE_PAK_Ste20_STLK.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
18 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
20 Sobic.003G015900 CWC15 homolog A, putative, expressed K12863: protein CWC15


Gene co-expression network
sample Sobic003G366500 Sobic003G366500 Sobic003G153700 Sobic003G153700 Sobic003G366500--Sobic003G153700 Sobic001G221500 Sobic001G221500 Sobic003G366500--Sobic001G221500 Sobic001G466700 Sobic001G466700 Sobic003G366500--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic003G366500--Sobic004G274400 Sobic001G260400 Sobic001G260400 Sobic003G366500--Sobic001G260400 Sobic007G183700 Sobic007G183700 Sobic003G366500--Sobic007G183700 Sobic006G249700 Sobic006G249700 Sobic003G366500--Sobic006G249700 Sobic007G026300 Sobic007G026300 Sobic003G366500--Sobic007G026300 Sobic003G181800 Sobic003G181800 Sobic003G366500--Sobic003G181800 Sobic003G015900 Sobic003G015900 Sobic003G153700--Sobic003G015900 Sobic003G153700--Sobic003G366500 Sobic003G312200 Sobic003G312200 Sobic003G153700--Sobic003G312200 Sobic001G051200 Sobic001G051200 Sobic003G153700--Sobic001G051200 Sobic004G059000 Sobic004G059000 Sobic003G153700--Sobic004G059000 Sobic002G352600 Sobic002G352600 Sobic003G153700--Sobic002G352600 Sobic009G228700 Sobic009G228700 Sobic003G153700--Sobic009G228700 Sobic001G376800 Sobic001G376800 Sobic003G153700--Sobic001G376800 Sobic002G418700 Sobic002G418700 Sobic003G153700--Sobic002G418700 Sobic001G221500--Sobic003G366500 Sobic006G182200 Sobic006G182200 Sobic001G221500--Sobic006G182200 Sobic001G360200 Sobic001G360200 Sobic001G221500--Sobic001G360200 Sobic010G209000 Sobic010G209000 Sobic001G221500--Sobic010G209000 Sobic009G175300 Sobic009G175300 Sobic001G221500--Sobic009G175300 Sobic007G180100 Sobic007G180100 Sobic001G221500--Sobic007G180100 Sobic004G356900 Sobic004G356900 Sobic001G221500--Sobic004G356900 Sobic006G200600 Sobic006G200600 Sobic001G221500--Sobic006G200600 Sobic007G039400 Sobic007G039400 Sobic001G221500--Sobic007G039400 Sobic006G252700 Sobic006G252700 Sobic001G466700--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic001G466700--Sobic003G081000 Sobic001G143500 Sobic001G143500 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic004G021100 Sobic004G021100 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic007G118200 Sobic007G118200 Sobic001G466700--Sobic007G118200 Sobic006G148200 Sobic006G148200 Sobic004G274400--Sobic006G148200 Sobic001G323000 Sobic001G323000 Sobic004G274400--Sobic001G323000 Sobic006G225600 Sobic006G225600 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic002G131900 Sobic002G131900 Sobic004G274400--Sobic002G131900 Sobic004G274400--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500 Sobic005G027400 Sobic005G027400 Sobic001G260400--Sobic005G027400 Sobic003G139900 Sobic003G139900 Sobic001G260400--Sobic003G139900 Sobic010G079900 Sobic010G079900 Sobic001G260400--Sobic010G079900 Sobic001G441400 Sobic001G441400 Sobic001G260400--Sobic001G441400 Sobic004G065100 Sobic004G065100 Sobic001G260400--Sobic004G065100 Sobic004G274200 Sobic004G274200 Sobic001G260400--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic001G260400--Sobic001G220300 Sobic008G047800 Sobic008G047800 Sobic001G260400--Sobic008G047800 Sobic002G134200 Sobic002G134200 Sobic001G260400--Sobic002G134200 Sobic007G183700--Sobic003G366500 Sobic007G183700--Sobic003G153700 Sobic007G183700--Sobic001G466700 Sobic006G034000 Sobic006G034000 Sobic007G183700--Sobic006G034000 Sobic005G074500 Sobic005G074500 Sobic007G183700--Sobic005G074500 Sobic001G000200 Sobic001G000200 Sobic007G183700--Sobic001G000200 Sobic007G183700--Sobic003G312200 Sobic004G033600 Sobic004G033600 Sobic007G183700--Sobic004G033600 Sobic002G092300 Sobic002G092300 Sobic007G183700--Sobic002G092300 Sobic006G249700--Sobic009G228700 Sobic009G207000 Sobic009G207000 Sobic006G249700--Sobic009G207000 Sobic004G348300 Sobic004G348300 Sobic006G249700--Sobic004G348300 Sobic006G249700--Sobic003G312200 Sobic006G249700--Sobic002G352600 Sobic004G275700 Sobic004G275700 Sobic006G249700--Sobic004G275700 Sobic006G249700--Sobic001G323000 Sobic006G249700--Sobic006G148200 Sobic009G138100 Sobic009G138100 Sobic006G249700--Sobic009G138100 Sobic007G026300--Sobic004G021100 Sobic004G205600 Sobic004G205600 Sobic007G026300--Sobic004G205600 Sobic001G512700 Sobic001G512700 Sobic007G026300--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic001G497300 Sobic001G497300 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic001G090400 Sobic001G090400 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic003G181800--Sobic006G252700 Sobic009G257800 Sobic009G257800 Sobic003G181800--Sobic009G257800 Sobic003G181800--Sobic003G366500 Sobic003G181800--Sobic001G466700 Sobic001G201400 Sobic001G201400 Sobic003G181800--Sobic001G201400 Sobic004G240800 Sobic004G240800 Sobic003G181800--Sobic004G240800 Sobic005G216300 Sobic005G216300 Sobic003G181800--Sobic005G216300 Sobic003G181800--Sobic001G220300 Sobic003G181800--Sobic004G274200
Octagon: transcription factors


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