Gene annotation
Transcriptome id Sobic.003G353400.1
Synonym Sb03g039580
Functional annotation DHHC zinc finger domain containing protein, expressed
UniProt C5XPQ6
Pfam PF01529
Panther DB PTHR22883 PTHR22883:SF92
NCBI CDD KOG1315; Predicted DHHC-type Zn-finger protein
KEGG Orthology K18932; palmitoyltransferase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G09320 : DHHC-type zinc finger family protein
RAP-DB (Rice) LOC_Os01g62620.1 : DHHC zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043894 , Zm00025a026883
Brachypodium KQK05925 , KQK05927 , PNT73175 , PNT73176
Barley HORVU1Hr1G072560.10 , HORVU1Hr1G072560.5 , HORVU1Hr1G072560.4 , HORVU1Hr1G072560.7 , HORVU1Hr1G072560.6 , HORVU1Hr1G072560.1 , HORVU1Hr1G072560.3 , HORVU1Hr1G072560.2 , HORVU1Hr1G072560.9 , HORVU1Hr1G072560.8
Wheat TraesCS1D02G282400 , TraesCS3A02G361400 , TraesCS3A02G361400 , TraesCS3D02G355100 , TraesCS3B02G393700 , TraesCS1B02G292300 , TraesCS1A02G283200 , TraesCS1A02G283200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
2 Sobic.001G099100 endoglucanase, putative, expressed K01179: endoglucanase
3 Sobic.007G225300 2-nitropropane dioxygenase family, putative, expressed -
4 Sobic.006G242100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase family 43 protein, putative, expressed -
5 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
6 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
7 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
8 Sobic.010G050900 harpin-induced protein, putative, expressed -
9 Sobic.003G312400 dymeclin, putative, expressed -
10 Sobic.009G194200 CSLC7 - cellulose synthase-like family C, expressed -
11 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
12 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
13 Sobic.004G261200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.007G180900 BAG domain-containing protein, putative, expressed -
15 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
16 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.001G313301 - -
18 Sobic.001G436100 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase
19 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
20 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -


Gene co-expression network
sample Sobic003G353400 Sobic003G353400 Sobic004G337900 Sobic004G337900 Sobic003G353400--Sobic004G337900 Sobic001G099100 Sobic001G099100 Sobic003G353400--Sobic001G099100 Sobic007G225300 Sobic007G225300 Sobic003G353400--Sobic007G225300 Sobic006G242100 Sobic006G242100 Sobic003G353400--Sobic006G242100 Sobic009G030200 Sobic009G030200 Sobic003G353400--Sobic009G030200 Sobic007G178200 Sobic007G178200 Sobic003G353400--Sobic007G178200 Sobic003G319000 Sobic003G319000 Sobic003G353400--Sobic003G319000 Sobic010G050900 Sobic010G050900 Sobic003G353400--Sobic010G050900 Sobic003G312400 Sobic003G312400 Sobic003G353400--Sobic003G312400 Sobic004G337900--Sobic003G353400 Sobic001G450800 Sobic001G450800 Sobic004G337900--Sobic001G450800 Sobic003G361300 Sobic003G361300 Sobic004G337900--Sobic003G361300 Sobic003G278700 Sobic003G278700 Sobic004G337900--Sobic003G278700 Sobic003G198200 Sobic003G198200 Sobic004G337900--Sobic003G198200 Sobic003G198150 Sobic003G198150 Sobic004G337900--Sobic003G198150 Sobic001G157400 Sobic001G157400 Sobic004G337900--Sobic001G157400 Sobic009G229300 Sobic009G229300 Sobic004G337900--Sobic009G229300 Sobic009G099000 Sobic009G099000 Sobic004G337900--Sobic009G099000 Sobic004G051300 Sobic004G051300 Sobic001G099100--Sobic004G051300 Sobic002G118700 Sobic002G118700 Sobic001G099100--Sobic002G118700 Sobic002G276600 Sobic002G276600 Sobic001G099100--Sobic002G276600 Sobic002G075500 Sobic002G075500 Sobic001G099100--Sobic002G075500 Sobic010G090500 Sobic010G090500 Sobic001G099100--Sobic010G090500 Sobic009G026101 Sobic009G026101 Sobic001G099100--Sobic009G026101 Sobic009G125900 Sobic009G125900 Sobic001G099100--Sobic009G125900 Sobic001G099100--Sobic003G353400 Sobic009G079100 Sobic009G079100 Sobic001G099100--Sobic009G079100 Sobic007G225300--Sobic003G353400 Sobic005G195600 Sobic005G195600 Sobic007G225300--Sobic005G195600 Sobic003G052400 Sobic003G052400 Sobic007G225300--Sobic003G052400 Sobic007G225300--Sobic004G337900 Sobic007G148700 Sobic007G148700 Sobic007G225300--Sobic007G148700 Sobic007G225300--Sobic009G229300 Sobic009G182200 Sobic009G182200 Sobic007G225300--Sobic009G182200 Sobic007G225300--Sobic003G319000 Sobic001G237500 Sobic001G237500 Sobic007G225300--Sobic001G237500 Sobic004G172100 Sobic004G172100 Sobic006G242100--Sobic004G172100 Sobic001G294400 Sobic001G294400 Sobic006G242100--Sobic001G294400 Sobic003G095400 Sobic003G095400 Sobic006G242100--Sobic003G095400 Sobic002G372800 Sobic002G372800 Sobic006G242100--Sobic002G372800 Sobic006G242100--Sobic003G353400 Sobic004G111100 Sobic004G111100 Sobic006G242100--Sobic004G111100 Sobic001G038200 Sobic001G038200 Sobic006G242100--Sobic001G038200 Sobic009G194200 Sobic009G194200 Sobic006G242100--Sobic009G194200 Sobic009G220200 Sobic009G220200 Sobic006G242100--Sobic009G220200 Sobic001G050800 Sobic001G050800 Sobic009G030200--Sobic001G050800 Sobic009G030200--Sobic001G157400 Sobic009G030200--Sobic003G278700 Sobic010G071700 Sobic010G071700 Sobic009G030200--Sobic010G071700 Sobic005G231700 Sobic005G231700 Sobic009G030200--Sobic005G231700 Sobic003G227600 Sobic003G227600 Sobic009G030200--Sobic003G227600 Sobic003G342600 Sobic003G342600 Sobic009G030200--Sobic003G342600 Sobic009G159900 Sobic009G159900 Sobic009G030200--Sobic009G159900 Sobic006G032200 Sobic006G032200 Sobic009G030200--Sobic006G032200 Sobic003G392200 Sobic003G392200 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic004G025000 Sobic004G025000 Sobic007G178200--Sobic004G025000 Sobic008G016900 Sobic008G016900 Sobic007G178200--Sobic008G016900 Sobic007G178200--Sobic003G361300 Sobic009G134600 Sobic009G134600 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic002G330300 Sobic002G330300 Sobic007G178200--Sobic002G330300 Sobic007G178200--Sobic010G071700 Sobic001G196100 Sobic001G196100 Sobic003G319000--Sobic001G196100 Sobic003G092700 Sobic003G092700 Sobic003G319000--Sobic003G092700 Sobic003G319000--Sobic009G182200 Sobic001G026600 Sobic001G026600 Sobic003G319000--Sobic001G026600 Sobic003G252900 Sobic003G252900 Sobic003G319000--Sobic003G252900 Sobic003G319000--Sobic003G312400 Sobic001G418000 Sobic001G418000 Sobic003G319000--Sobic001G418000 Sobic003G410400 Sobic003G410400 Sobic003G319000--Sobic003G410400 Sobic003G023500 Sobic003G023500 Sobic003G319000--Sobic003G023500 Sobic006G267700 Sobic006G267700 Sobic010G050900--Sobic006G267700 Sobic010G050900--Sobic001G099100 Sobic002G270700 Sobic002G270700 Sobic010G050900--Sobic002G270700 Sobic010G050900--Sobic003G353400 Sobic010G050900--Sobic002G118700 Sobic004G272200 Sobic004G272200 Sobic010G050900--Sobic004G272200 Sobic010G050900--Sobic004G051300 Sobic009G195900 Sobic009G195900 Sobic010G050900--Sobic009G195900 Sobic002G124700 Sobic002G124700 Sobic010G050900--Sobic002G124700 Sobic003G312400--Sobic003G252900 Sobic003G312400--Sobic003G410400 Sobic003G312400--Sobic003G319000 Sobic004G168300 Sobic004G168300 Sobic003G312400--Sobic004G168300 Sobic003G312400--Sobic003G092700 Sobic010G168900 Sobic010G168900 Sobic003G312400--Sobic010G168900 Sobic006G129000 Sobic006G129000 Sobic003G312400--Sobic006G129000 Sobic010G059700 Sobic010G059700 Sobic003G312400--Sobic010G059700 Sobic002G297600 Sobic002G297600 Sobic003G312400--Sobic002G297600
Octagon: transcription factors


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