Gene annotation
Transcriptome id Sobic.003G321500.1
Synonym ATML1, Sb03g036820
Functional annotation Homeobox domain containing protein, expressed
UniProt C5XMC4
Pfam PF00046 PF01852
Panther DB PTHR24326 PTHR24326:SF240
NCBI CDD KOG0484; Transcription factor PHOX2/ARIX, contains HOX domain
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT4G04890 : protodermal factor 2
RAP-DB (Rice) LOC_Os01g57890.1 : Homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027241 , Zm00025a024728
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G090250 - -
2 Sobic.006G117300 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
3 Sobic.007G040000 - -
4 Sobic.001G246400 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.001G270600 - -
6 Sobic.005G174500 - -
7 Sobic.003G207600 OsFBD5 - F-box and FBD domain containing protein, expressed -
8 Sobic.006G064700 expressed protein -
9 Sobic.005G173900 - -
10 Sobic.003G207100 expressed protein -
11 Sobic.007G055300 MYB family transcription factor, putative, expressed -
12 Sobic.009G039100 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
13 Sobic.002G089500 DEF8 - Defensin and Defensin-like DEFL family, expressed -
14 Sobic.005G173800 DEFL12 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.002G007700 nodulin family protein, putative, expressed -
16 Sobic.003G415800 DEF9 - Defensin and Defensin-like DEFL family, expressed -
17 Sobic.001G392900 - -
18 Sobic.002G267700 bZIP family transcription factor, putative, expressed -
19 Sobic.002G302200 expressed protein -
20 Sobic.003G303500 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein


Gene co-expression network
sample Sobic003G321500 Sobic003G321500 Sobic009G090250 Sobic009G090250 Sobic003G321500--Sobic009G090250 Sobic006G117300 Sobic006G117300 Sobic003G321500--Sobic006G117300 Sobic007G040000 Sobic007G040000 Sobic003G321500--Sobic007G040000 Sobic001G246400 Sobic001G246400 Sobic003G321500--Sobic001G246400 Sobic001G270600 Sobic001G270600 Sobic003G321500--Sobic001G270600 Sobic005G174500 Sobic005G174500 Sobic003G321500--Sobic005G174500 Sobic003G207600 Sobic003G207600 Sobic003G321500--Sobic003G207600 Sobic006G064700 Sobic006G064700 Sobic003G321500--Sobic006G064700 Sobic005G173900 Sobic005G173900 Sobic003G321500--Sobic005G173900 Sobic009G090250--Sobic001G246400 Sobic009G090250--Sobic005G174500 Sobic009G090250--Sobic007G040000 Sobic009G090250--Sobic003G321500 Sobic009G090250--Sobic001G270600 Sobic009G090250--Sobic006G117300 Sobic009G090250--Sobic005G173900 Sobic009G090250--Sobic003G207600 Sobic002G007700 Sobic002G007700 Sobic009G090250--Sobic002G007700 Sobic006G117300--Sobic007G040000 Sobic006G117300--Sobic003G321500 Sobic006G117300--Sobic009G090250 Sobic006G117300--Sobic005G174500 Sobic006G117300--Sobic001G246400 Sobic006G031000 Sobic006G031000 Sobic006G117300--Sobic006G031000 Sobic006G117300--Sobic001G270600 Sobic002G267700 Sobic002G267700 Sobic006G117300--Sobic002G267700 Sobic002G089500 Sobic002G089500 Sobic006G117300--Sobic002G089500 Sobic007G040000--Sobic009G090250 Sobic007G040000--Sobic006G117300 Sobic007G040000--Sobic005G174500 Sobic007G040000--Sobic005G173900 Sobic007G040000--Sobic003G321500 Sobic007G040000--Sobic001G246400 Sobic007G040000--Sobic001G270600 Sobic006G070830 Sobic006G070830 Sobic007G040000--Sobic006G070830 Sobic007G040000--Sobic002G267700 Sobic001G246400--Sobic009G090250 Sobic001G246400--Sobic005G174500 Sobic001G246400--Sobic007G040000 Sobic001G246400--Sobic003G321500 Sobic001G246400--Sobic006G117300 Sobic001G246400--Sobic001G270600 Sobic001G246400--Sobic003G207600 Sobic001G246400--Sobic005G173900 Sobic001G246400--Sobic002G007700 Sobic001G270600--Sobic009G090250 Sobic001G270600--Sobic007G040000 Sobic001G270600--Sobic003G321500 Sobic003G415800 Sobic003G415800 Sobic001G270600--Sobic003G415800 Sobic001G270600--Sobic001G246400 Sobic001G270600--Sobic005G173900 Sobic001G270600--Sobic006G117300 Sobic001G270600--Sobic005G174500 Sobic009G006800 Sobic009G006800 Sobic001G270600--Sobic009G006800 Sobic005G174500--Sobic009G090250 Sobic005G174500--Sobic001G246400 Sobic005G174500--Sobic007G040000 Sobic005G174500--Sobic005G173900 Sobic005G174500--Sobic002G007700 Sobic005G174500--Sobic006G117300 Sobic003G091500 Sobic003G091500 Sobic005G174500--Sobic003G091500 Sobic005G174500--Sobic002G089500 Sobic003G207100 Sobic003G207100 Sobic005G174500--Sobic003G207100 Sobic005G173800 Sobic005G173800 Sobic003G207600--Sobic005G173800 Sobic003G207600--Sobic003G321500 Sobic003G207600--Sobic001G246400 Sobic010G085700 Sobic010G085700 Sobic003G207600--Sobic010G085700 Sobic003G207600--Sobic009G090250 Sobic003G207600--Sobic003G207100 Sobic009G040000 Sobic009G040000 Sobic003G207600--Sobic009G040000 Sobic008G081000 Sobic008G081000 Sobic003G207600--Sobic008G081000 Sobic003G207600--Sobic005G174500 Sobic009G039100 Sobic009G039100 Sobic006G064700--Sobic009G039100 Sobic009G039900 Sobic009G039900 Sobic006G064700--Sobic009G039900 Sobic002G345400 Sobic002G345400 Sobic006G064700--Sobic002G345400 Sobic001G328900 Sobic001G328900 Sobic006G064700--Sobic001G328900 Sobic005G102451 Sobic005G102451 Sobic006G064700--Sobic005G102451 Sobic003G303500 Sobic003G303500 Sobic006G064700--Sobic003G303500 Sobic005G153400 Sobic005G153400 Sobic006G064700--Sobic005G153400 Sobic005G148600 Sobic005G148600 Sobic006G064700--Sobic005G148600 Sobic010G195600 Sobic010G195600 Sobic006G064700--Sobic010G195600 Sobic005G173900--Sobic007G040000 Sobic005G173900--Sobic005G174500 Sobic005G173900--Sobic009G090250 Sobic005G173900--Sobic001G246400 Sobic003G211600 Sobic003G211600 Sobic005G173900--Sobic003G211600 Sobic001G374600 Sobic001G374600 Sobic005G173900--Sobic001G374600 Sobic002G302200 Sobic002G302200 Sobic005G173900--Sobic002G302200 Sobic005G173900--Sobic001G270600 Sobic005G173900--Sobic006G070830
Octagon: transcription factors


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