Gene annotation
Transcriptome id Sobic.003G000800.1
Synonym Sb03g000260
Functional annotation RWP-RK domain-containing protein, putative, expressed
UniProt C5XJG9
Pfam PF02042
Panther DB PTHR32002 PTHR32002:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G74480 : RWP-RK domain-containing protein
RAP-DB (Rice) LOC_Os01g14420.1 : RWP-RK domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022761
Brachypodium -
Barley HORVU3Hr1G033700.1 , HORVU3Hr1G033700.2 , HORVU3Hr1G033700.3
Wheat TraesCS3D02G173800 , TraesCS3A02G167700 , TraesCS3B02G198700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
2 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
3 Sobic.001G078500 expressed protein -
4 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
5 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
6 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
7 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
8 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
9 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
10 Sobic.001G054200 green ripe-like, putative, expressed -
11 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
12 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
13 Sobic.009G171700 SAG20, putative, expressed -
14 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
16 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
17 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
18 Sobic.003G127400 BSD domain-containing protein, putative, expressed -
19 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.006G262900 expressed protein -


Gene co-expression network
sample Sobic003G000800 Sobic003G000800 Sobic009G246950 Sobic009G246950 Sobic003G000800--Sobic009G246950 Sobic001G031200 Sobic001G031200 Sobic003G000800--Sobic001G031200 Sobic001G078500 Sobic001G078500 Sobic003G000800--Sobic001G078500 Sobic004G253000 Sobic004G253000 Sobic003G000800--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G000800--Sobic001G512600 Sobic001G371300 Sobic001G371300 Sobic003G000800--Sobic001G371300 Sobic010G083700 Sobic010G083700 Sobic003G000800--Sobic010G083700 Sobic001G149700 Sobic001G149700 Sobic003G000800--Sobic001G149700 Sobic007G186300 Sobic007G186300 Sobic003G000800--Sobic007G186300 Sobic002G256300 Sobic002G256300 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic010G168600 Sobic010G168600 Sobic009G246950--Sobic010G168600 Sobic009G246950--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic009G246950--Sobic001G054200 Sobic009G246950--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic001G007200 Sobic001G007200 Sobic009G246950--Sobic001G007200 Sobic009G054700 Sobic009G054700 Sobic001G031200--Sobic009G054700 Sobic009G028800 Sobic009G028800 Sobic001G031200--Sobic009G028800 Sobic001G031200--Sobic003G000800 Sobic001G031200--Sobic001G149700 Sobic001G031200--Sobic001G371300 Sobic001G031200--Sobic010G168600 Sobic001G031200--Sobic010G083700 Sobic004G006300 Sobic004G006300 Sobic001G031200--Sobic004G006300 Sobic003G250500 Sobic003G250500 Sobic001G031200--Sobic003G250500 Sobic001G078500--Sobic010G168600 Sobic001G078500--Sobic009G171700 Sobic003G007500 Sobic003G007500 Sobic001G078500--Sobic003G007500 Sobic006G263900 Sobic006G263900 Sobic001G078500--Sobic006G263900 Sobic004G339200 Sobic004G339200 Sobic001G078500--Sobic004G339200 Sobic001G078500--Sobic010G083700 Sobic001G078500--Sobic009G246950 Sobic001G078500--Sobic007G186300 Sobic002G400000 Sobic002G400000 Sobic001G078500--Sobic002G400000 Sobic003G050600 Sobic003G050600 Sobic004G253000--Sobic003G050600 Sobic004G253000--Sobic010G083700 Sobic001G098200 Sobic001G098200 Sobic004G253000--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic004G253000--Sobic003G015900 Sobic004G253000--Sobic003G250500 Sobic004G059000 Sobic004G059000 Sobic004G253000--Sobic004G059000 Sobic001G051200 Sobic001G051200 Sobic004G253000--Sobic001G051200 Sobic004G253000--Sobic009G246950 Sobic004G253000--Sobic003G000800 Sobic003G350600 Sobic003G350600 Sobic001G512600--Sobic003G350600 Sobic001G467000 Sobic001G467000 Sobic001G512600--Sobic001G467000 Sobic008G142700 Sobic008G142700 Sobic001G512600--Sobic008G142700 Sobic001G512600--Sobic003G250500 Sobic004G150400 Sobic004G150400 Sobic001G512600--Sobic004G150400 Sobic003G226500 Sobic003G226500 Sobic001G512600--Sobic003G226500 Sobic004G301900 Sobic004G301900 Sobic001G512600--Sobic004G301900 Sobic001G512600--Sobic003G000800 Sobic001G372000 Sobic001G372000 Sobic001G512600--Sobic001G372000 Sobic003G273100 Sobic003G273100 Sobic001G371300--Sobic003G273100 Sobic002G291300 Sobic002G291300 Sobic001G371300--Sobic002G291300 Sobic001G478300 Sobic001G478300 Sobic001G371300--Sobic001G478300 Sobic004G274700 Sobic004G274700 Sobic001G371300--Sobic004G274700 Sobic001G427800 Sobic001G427800 Sobic001G371300--Sobic001G427800 Sobic004G079100 Sobic004G079100 Sobic001G371300--Sobic004G079100 Sobic001G371300--Sobic010G083700 Sobic001G056700 Sobic001G056700 Sobic001G371300--Sobic001G056700 Sobic001G371300--Sobic001G149700 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic010G071200 Sobic010G071200 Sobic001G149700--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G149700--Sobic010G055500 Sobic004G231400 Sobic004G231400 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic003G115800 Sobic003G115800 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic007G186300--Sobic001G007200 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200
Octagon: transcription factors


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